Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02302 ATGACCCTCTCAACTAACTTTACCTTTGTCACAATCATCTTCCTTTTTGTAACACTCACTCTCAACCCAGTCCTTACTCAGCTACCTCCATATGCTTGTGATTGGTCAAACCCAACAACCAGATCCTACCCATTTTGCAACCCAAAACTTGCAATCTTACAAAGAACAAGAGACCTTGTTTCTAGACTCACATTGGATGAAAAACTAGCTCAACTCGTTAACTCAGCACCTCCCATTCCACGACTCGGTATCCCTGGTTATCAATGGTGGAGTGAATCACTTCATGGAGTTGGTAATGTTGGTCGTGGTATTTTGTTCAATGGTACTATTTCATCTGCAACTAGCTTCCCTCAAGTTATTCTCACTGCAGCTACCTTTGATTCTCATCTCTGGTACCGAATCGGTCAGGCAATTGGAATAGAAGCAAGGGCAATATACAATGGAGGGCAAGCAATGGGGATGACATTTTGGGCACCAAACATAAACATATTTAGGGACCCAAGATGGGGTAGAGGACAAGAAACAGCTGGAGAAGATCCTCTGATGACTTCTAACTACGCTGTTTCCTATGTTAGAGGAATTCAAGGTGATTCCTTTCAAGGTGGTAAATTAAGGGGACACCTTCAAGCTTCTGCATGTTGCAAACATTTCACTGCCTATGATTTGGACAATTGGAAGGGTGTTAATCGTTTTCTCTTCGATGCCAAAGTGAGTTTGCAAGATTTAGCGGACACATATCAGCCACCATTTCACAGTTGTGTAGAGCAAGGAAGAGCTAGTGGGATAATGTGTGCTTATAACCGTGTAAATGGAGTTCCAAGTTGTGCTGATTACAATCTCTTAACTGAAACAGTTAGAAAACAATGGGAATTCCACGGGTATATTGTGTCAGATTGTGGAGCTGTTGGAATCATACATGATGAACAAGGATATGCAAAATCAGCAGAAGATGCTGTAGCAGATGTTCTTCACGCCGGGATGGATTTGGAATGTGGAACTTATTTGACAGACCATGCAAAATCAGCAGTGGAGCAGAAAAAACTACATATACAACAAATAGACCGTGCCCTTCACAATCTATTTTCAATCAGAATGAGGTTAGGCCAATTTGGTGGAAATCCAAGCAAACTTCCATTTGGTATGATTGGTCCCAACCATGTCTGTTCTGAAAATCACTTATATCTAGCTCTTGAAGCTGCACGAAACGGCATTGTCCTTTTAAAGAACACTGCTTCACTTCTTCCACTTCCGAAAACAAGTACTATTTCCTTAGCTGTGATAGGTCCTAATGCCAATGCTTCACCTTTAACACTTCTAGGAAACTATGCCGGCCCTCCTTGTAAATACATTACTATACTCCAAGGGTTTCGGCATTATGTTAAGGATGCTGTTTTTCATCCTGGTTGTGACGGTGGACCAAAGTGTGCTTCGGCACAAATAAATGAGGCCGTGAACATTGCAAAGAAAGTGGATTATGTTGTTTTGGTTATGGGATTGGATCAAAGTGAAGAAAGGGAAGAGCGGGATCGCGTTCACCTTGACTTGCCAGGCAAGCAACTTGAACTCATTAACAGTGTTGCCAAAGCTTCTAAGCGACCTGTTATTTTGGTGCTCCTTTGTGGTGGCCCTATAGATATTAGTTCAGCAAAATATGACAATAAAATTGGAGGTATCATTTGGGCTGGTTATCCGGGTGAACTTGGAGGCATTGCGCTTGCACAGATTATCTTTGGTCATCACAATCCGGGAGGAAGACTACCAATTACTTGGTACCCTAAAGATTACATCAAAGTGCCAATGACAGACATGAGAATGCGAGCTGATCCCTCAACCGGCTATCCCGGAAGAACATACAGATTTTACAAGGGCCCTACTGTGTATGAATTTGGCCATGGACTAAGCTACACAAAATATTCCTACAAGTTTGTTTCCGTTTCACACGACAAACTTCATTTCAATCAATCATCCACTCATTTGATGATTGAGAATTCAGAAACCATAAGGTACAAATTAGTTTCAGAGTTGAGTGAAGAAACCTGCAAAAGCATGTTGGTCTCAGTCACAATTGGAGTTAAAAACCACGGAACCGTGGTGGGGAGACATCCCATATTGCTGTTTATGAGACCGCGAAAACCGAGAATTGGAAGTCCTGTGAAACAATTGGTTGCTTTTCATAGTTTGTTGTTAGATGCAGGGGAAATAAGCCATGTTGGATTCGAGCTTAGTCCTTGTGAGCATCTTAGTCGAGCAAACGAGGCTGGTTTAAAGGTCATAGAAGAAGGGTCTCATTTGTTGCTTGTGGGAGAAGAAGAGTACCTAATAGATATCATTGTTTGA 2337 0.4189 MTLSTNFTFVTIIFLFVTLTLNPVLTQLPPYACDWSNPTTRSYPFCNPKLAILQRTRDLVSRLTLDEKLAQLVNSAPPIPRLGIPGYQWWSESLHGVGNVGRGILFNGTISSATSFPQVILTAATFDSHLWYRIGQAIGIEARAIYNGGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPLMTSNYAVSYVRGIQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVNRFLFDAKVSLQDLADTYQPPFHSCVEQGRASGIMCAYNRVNGVPSCADYNLLTETVRKQWEFHGYIVSDCGAVGIIHDEQGYAKSAEDAVADVLHAGMDLECGTYLTDHAKSAVEQKKLHIQQIDRALHNLFSIRMRLGQFGGNPSKLPFGMIGPNHVCSENHLYLALEAARNGIVLLKNTASLLPLPKTSTISLAVIGPNANASPLTLLGNYAGPPCKYITILQGFRHYVKDAVFHPGCDGGPKCASAQINEAVNIAKKVDYVVLVMGLDQSEEREERDRVHLDLPGKQLELINSVAKASKRPVILVLLCGGPIDISSAKYDNKIGGIIWAGYPGELGGIALAQIIFGHHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPTVYEFGHGLSYTKYSYKFVSVSHDKLHFNQSSTHLMIENSETIRYKLVSELSEETCKSMLVSVTIGVKNHGTVVGRHPILLFMRPRKPRIGSPVKQLVAFHSLLLDAGEISHVGFELSPCEHLSRANEAGLKVIEEGSHLLLVGEEEYLIDIIV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02302 778 FunFam probable beta-D-xylosidase 7 55 376 - -
Trre5g02302 778 SUPERFAMILY (Trans)glycosidases 43 402 IPR017853 -
Trre5g02302 778 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 404 638 IPR036881 GO:0004553|GO:0005975
Trre5g02302 778 Pfam Glycosyl hydrolase family 3 C-terminal domain 404 635 IPR002772 GO:0004553|GO:0005975
Trre5g02302 778 Gene3D - 390 636 IPR036881 GO:0004553|GO:0005975
Trre5g02302 778 Pfam Fibronectin type III-like domain 704 769 IPR026891 -
Trre5g02302 778 Gene3D - 55 376 IPR036962 GO:0004553|GO:0005975
Trre5g02302 778 FunFam probable beta-D-xylosidase 2 389 636 - -
Trre5g02302 778 PRINTS Glycosyl hydrolase family 3 signature 284 302 IPR001764 GO:0004553|GO:0005975
Trre5g02302 778 PRINTS Glycosyl hydrolase family 3 signature 116 135 IPR001764 GO:0004553|GO:0005975
Trre5g02302 778 PRINTS Glycosyl hydrolase family 3 signature 210 226 IPR001764 GO:0004553|GO:0005975
Trre5g02302 778 Gene3D Immunoglobulins 664 775 IPR013783 -
Trre5g02302 778 Pfam Glycosyl hydrolase family 3 N terminal domain 109 360 IPR001764 GO:0004553|GO:0005975
Trre5g02302 778 PANTHER SUGAR HYDROLASE-RELATED 26 773 IPR044993 GO:0009044|GO:0045493
Trre5g02302 778 SMART Fn3_like_2 701 771 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02302 Trre-Chr5 17452294 17457991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02302 29 771 Glycoside Hydrolase AT1G78060 64.879 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02302 - - aprc:113867121 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02302 5 17452294 17457991 Trre5g02302 5 17452294 17457991 ECH
Trre9g03083 9 39244455 39263981 Trre5g02302 5 17452294 17457991 PCT