Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02721 ATGCAGGAATATTGGTTCAATAATAGGATCGTCAAGATGAAGAAATTGTATGGAGGAGTTCTGATTGCCTCATCATTTACACTTTTTATGCTTATGATCCTGCGATATGGGGTCATGAAAAATCCTACTGGTGAAGGTTATTTGAATATACCTGTCTTAATTAATGGAACTAATCCTCTAGAGTGGATAAATCCTGTGATTCCACCTGCTATTCAAAATCCAGCTAGTACTTCTCAAGTTATTTCTGCGGACATTTTAGTATCTAGCCTCTTCGCCAGGAACAACTTTTCCAAACAAGAACAACAAACTCTGCAGACATGGAACCACTTGAAACACTTAATTGATCATGTTCAGGGTTTACCTAGTGCAGCAGAAGCTATCAAGGAGGCTGCGAGTGTATGGAATAGTCTTGTTTCCTCAGTTGAAGAGCAAAAGCAAGGTCATGCAAACGATAGTTCAAGAGCAAAAGAGAAACAGTGTCCTCATTTTCTTAATAAGATGAATTCTACTGAACTTGGTAATAGTAGTTACAGACTGCAAGTTCCTTGTGGCCTGACACAAGGCTCTTCCATTACTGTAATTGGCATTCCAAATGGTATTCTAGGTAATTTTCGGATAGACTTGACTGGAGATTCAATCCCTGGGGAACCTGATCCCCCAGTTATTTTGCACTACAATGTTAGGCTTCATGGTGATAAAATCACTGAAGATCCAGTAATAGTTCAAAACACCTGGACAGTAGCTCATGATTGGGGTGAAGAGGAACGCTGTCCATCCCCCGGGTCTGAAGAGGTTAAAAAAGTTGATGAGTTGGAACAGTGCAATAAGATTGTAGGGAAGAACATTAGCCAACTTTACACAGGCGGCATGCATTCCCACACTTCAAGACAAATTTCAGCAACTGAAGGGCAATTAATTAAGAGAAAATACTTTCCTTTTAAGCAAGGTTACCCCTTTGTAGCAACTATTAGAGTGGGATCAGAGGGAATCCAGATGACAGTTGATGGAAAGCACATAACTTCATTTGCTTTTCGTGAAACTCTGGAGCCATGGCTTGTCAGTGAGATAAAAATTTCAGGGGATATAAAATTAGAATCTATTCTTGCAAGTGGTCTGCCTACATCAGAGGATTCAGAGCATATTGTTGATCTGGAACTATTGAAGTCAAGTCCTGTATCTGCACGGGCCCCATTGGATCTCTTCATTGGTGTTTTCTCTACAGCTAACAATTTTAAGCGACGGATGGCTGTTAGAAGAACCTGGATGCAGTACAATGCAGTTAGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGCATAAAAGCCAAATAGTTAATGAAGAATTGTGGAAAGAAGCACAAACATATGGAGACATACAGTTGATGCCATTTGTTGACTACTATAGCCTCATCACCTGGAAATCTTTAGCAATCTGCATTTTTGGAACACAGGTTGTTTCAGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTAGATGAAGTGCTAGGCTCTTTGCAGAGGATCAATGTGGCTCGTGGGTTACTATATGGACTGATCAATTCAGATTCCGAACCTCATCGAAATCCTGATAGCAAATGGTACATCAGCCCAGAGGAATGGAGCGAAGGAACTTATCCTCCATGGGCACATGGTCCCGGGTATGTGGTCTCACATGACATAGCAAAGACAGTGTACAAGAAATACAGAGAGAATCATTTGAAGATGTTTAAACTAGAAGATGTTGCGATGGGAATCTGGATCGCAGACATGAAGAAAGAAGGTCTAGAAGTTCGATACGAGAATGAGGCCAGAGTTTATAATGAGGGTTGCAAGGATGGTTATGTCGTTGCCCATTACCAAGGTCCTAGGGAGATGCTCTGTTTGTGGCACAAGCTTCAGGAATTAAAACGCGCAACATGCTGTGGTGATAGAAGGTGA 1953 0.4107 MQEYWFNNRIVKMKKLYGGVLIASSFTLFMLMILRYGVMKNPTGEGYLNIPVLINGTNPLEWINPVIPPAIQNPASTSQVISADILVSSLFARNNFSKQEQQTLQTWNHLKHLIDHVQGLPSAAEAIKEAASVWNSLVSSVEEQKQGHANDSSRAKEKQCPHFLNKMNSTELGNSSYRLQVPCGLTQGSSITVIGIPNGILGNFRIDLTGDSIPGEPDPPVILHYNVRLHGDKITEDPVIVQNTWTVAHDWGEEERCPSPGSEEVKKVDELEQCNKIVGKNISQLYTGGMHSHTSRQISATEGQLIKRKYFPFKQGYPFVATIRVGSEGIQMTVDGKHITSFAFRETLEPWLVSEIKISGDIKLESILASGLPTSEDSEHIVDLELLKSSPVSARAPLDLFIGVFSTANNFKRRMAVRRTWMQYNAVRSNTTAVRFFVGLHKSQIVNEELWKEAQTYGDIQLMPFVDYYSLITWKSLAICIFGTQVVSAKFVMKTDDDAFVRVDEVLGSLQRINVARGLLYGLINSDSEPHRNPDSKWYISPEEWSEGTYPPWAHGPGYVVSHDIAKTVYKKYRENHLKMFKLEDVAMGIWIADMKKEGLEVRYENEARVYNEGCKDGYVVAHYQGPREMLCLWHKLQELKRATCCGDRR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02721 650 CDD GLECT 177 367 IPR001079 GO:0030246
Trre9g02721 650 Gene3D - 392 619 - -
Trre9g02721 650 SMART Gal_bind_lectin_2 181 369 IPR001079 GO:0030246
Trre9g02721 650 Gene3D - 170 369 - -
Trre9g02721 650 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 177 370 IPR001079 GO:0030246
Trre9g02721 650 Pfam Galactosyltransferase 412 596 IPR002659 GO:0006486|GO:0016020|GO:0016758
Trre9g02721 650 SUPERFAMILY Concanavalin A-like lectins/glucanases 177 370 IPR013320 -
Trre9g02721 650 FunFam Beta-1,3-galactosyltransferase GALT1 391 620 - -
Trre9g02721 650 Pfam Galactoside-binding lectin 177 368 IPR001079 GO:0030246
Trre9g02721 650 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 339 603 IPR002659 GO:0006486|GO:0016020|GO:0016758
Trre9g02721 650 SMART galectin_3 177 370 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02721 Trre-Chr9 34345167 34348973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02721 13 646 Glycosyltransferase AT1G26810 62.773 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02721 K14413 - gmx:100782548 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02721 9 34345167 34348973 Trre9g02721 9 34345167 34348973 ECH
Trre15g04982 15 59778046 59783269 Trre9g02721 9 34345167 34348973 PCT