Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04982 ATGAAACCTCTATATTTAGTTCAAGGTTTAATGAAAATGAAGAAGTGGTATGGAGGTTTGTTGATCATAGCTTTAGGTATGATGTTGTTTCTACTGTATAATCTTAAAGGAATTCAACCACAAAAGCATTCAACAAAACAATCTGCATACGGTTTTTTCAATGGCCATTCACCACCAAATGATTCTATTAAAGGAAGCAACAATGTTGCAGTAGTAACCTCTTTCGATGAAGAACAAAAACTTGTACCAGAACCAACAAAAAGGCCACATTTGGTACATGTCGCAGGGCTTGATGATCTGTATGACACAAAAAATTTATCCGAAGGAGTAACAAATGTTGTACTTGTTTGGACACATTTACGTTTGTTGCTTTCGAGGTCGGATGCTTTGCCTGAAATAGCTCAAGGAGTTAAAGAGGCTTCTGCAGCATGGAAAGAGTTGATGTCCACTGTTGAAAGTGACAAAGTGTCTAAGATTAGTAAGATAGACAGCCCAGAAAATCTAAACTGTCCTTTCTCTGTGATGATACTTAGCAAGACGATAGCAGATAGTGGAATCACTCTGGATCTCCCTTGTGGTTTGGTTGTAGATTCTTCTATTACACTGATTGGCATCCCTAATGGACAAAACAGTAGCTTTCAGATTGACCTAGCTGGACAGGAGCTAGAAGAGGAACCAAATCCTCCAATTATCTTGCATTATAATGTGAGTCTTCCTGGAGAAAACATGACAGAGGAACCGTATATTGTTCAAAATACATGGACTAATGATTTTGGGTGGGGGAAAGAGGAAAGGTGTCCTGCTCGTAGTTCTGCTAATATCCGCAAAGTTGATGAGCTTGTTCTCTGCAATGTACAAGCTGTCAGAAATAACAATGACGAGAATGAAAATGTCGGCCAACCTACTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCGCATAGAACTGCTAATTTCCCTTTTTCCGAGGGTAATCCTTTCACTGCCACATTGTGGGTTGGTTCAGAGGGATTTCACATGACTGTGAATGGAAGGCATGAAACATCTTTTGCATATAGGGAGAAGCTTGAACCATGGTTAGTCAGCACAATTAAAGTAGCAGGCAGTTTAAGTCTCTTATCAGTTCTTGCTAAAGGTTTACCCGTCACCGAAGATAACGATATAGTTGTAGATGTTGAGAACCTGAAGGCTCCTTCTATCCCTAAGAAAAGGCTTGTTTTGTTGATCGGAGTATTTTCTACCGGAAATAACTTTGAACGCCGAATGGCGCTGAGGAGGTCTTGGTTGCAGTATGAGGCTGTACGTTCTGGTGAAGTTGCTGTCAGATTTTTTATCGGGCTTCATAAGAACAATAGAGTTAATTTGGAGTTATGGAGAGAAGCTCAAGCATATGGAGATATCCAGTTAATGCCTTTTGTTGATTATTATAGTTTGATTTCCTTGAAGACAATTGCAATTTGCATTATGGGGACAAAAATCATCCCTTCTAAATACATAATGAAAACAGATGATGATGCTTTCGTAAGGATTGATGAAGTTCTTTCCACCCTAAAAGGGAAGCCGTCTGAAGGCCTCTTGTACGGTCTAATATCTTCTAAATCATCTCCTGATAGGGATAAGGACAGCAAGTGGTACATCAGTGATGCGGAATGGCCACATGATACATACCCACCATGGGCACATGGCCCTGGCTATGTCATCTCTCGCGACATTGCGAAATTTGTTGTCTCTGGTCACCAGGAAAGAAAACTCAAGTTCTTTAAATTAGAAGATGTTGCAATGGGGATATGGATTGAACAGTTTAAGAATAGTGGCAAAGAAGTACATTATGAGAATGATGAGAGGTTTTTCAATGCTGGATGTGACTCAAATTATGTACTTGCACATTATCAAAGTCCAAGGATGGTGCTATGCCTGTGGGAGAAACTGCAGAAAGAACACAAGCCAGAATGCTGTGAATAG 1965 0.3985 MKPLYLVQGLMKMKKWYGGLLIIALGMMLFLLYNLKGIQPQKHSTKQSAYGFFNGHSPPNDSIKGSNNVAVVTSFDEEQKLVPEPTKRPHLVHVAGLDDLYDTKNLSEGVTNVVLVWTHLRLLLSRSDALPEIAQGVKEASAAWKELMSTVESDKVSKISKIDSPENLNCPFSVMILSKTIADSGITLDLPCGLVVDSSITLIGIPNGQNSSFQIDLAGQELEEEPNPPIILHYNVSLPGENMTEEPYIVQNTWTNDFGWGKEERCPARSSANIRKVDELVLCNVQAVRNNNDENENVGQPTSDIPSNISSESAHRTANFPFSEGNPFTATLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSTIKVAGSLSLLSVLAKGLPVTEDNDIVVDVENLKAPSIPKKRLVLLIGVFSTGNNFERRMALRRSWLQYEAVRSGEVAVRFFIGLHKNNRVNLELWREAQAYGDIQLMPFVDYYSLISLKTIAICIMGTKIIPSKYIMKTDDDAFVRIDEVLSTLKGKPSEGLLYGLISSKSSPDRDKDSKWYISDAEWPHDTYPPWAHGPGYVISRDIAKFVVSGHQERKLKFFKLEDVAMGIWIEQFKNSGKEVHYENDERFFNAGCDSNYVLAHYQSPRMVLCLWEKLQKEHKPECCE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04982 654 FunFam Beta-1,3-galactosyltransferase GALT1 400 627 - -
Trre15g04982 654 Pfam Galactosyltransferase 420 603 IPR002659 GO:0006486|GO:0016020|GO:0016758
Trre15g04982 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 187 379 IPR013320 -
Trre15g04982 654 CDD GLECT 187 376 IPR001079 GO:0030246
Trre15g04982 654 SMART Gal_bind_lectin_2 190 378 IPR001079 GO:0030246
Trre15g04982 654 MobiDBLite consensus disorder prediction 292 311 - -
Trre15g04982 654 Pfam Galactoside-binding lectin 187 377 IPR001079 GO:0030246
Trre15g04982 654 Gene3D - 184 378 - -
Trre15g04982 654 SMART galectin_3 184 379 IPR001079 GO:0030246
Trre15g04982 654 Gene3D - 402 633 - -
Trre15g04982 654 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 186 379 IPR001079 GO:0030246
Trre15g04982 654 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 345 603 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04982 Trre-Chr15 59778046 59783269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04982 11 654 Glycosyltransferase AT3G06440 51.005 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04982 K20843 - gmx:100816729 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04982 15 59778046 59783269 Trre15g04982 15 59778046 59783269 ECH
Trre15g04982 15 59778046 59783269 Trre9g02721 9 34345167 34348973 PCT