Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02460 ATGATGATGATTCTCTATATGCTCTTCATGAGCTTTGAAATACCCTTAGCTTTCAAAGCAGGTTTGGGTTCAGAAACTGTTGCTATTGGTTTTCTCACCGAAGCAATGCCACTTTTAGCAGAACAAAACCTCAAAAAAATTCGACCCTTTAGGCTACAATTAAAGAAAGTTTCAACCTTGAGCTTCAACAATAGCTTTGAAGGTGTATCAGAGCTTTACAAGGTAGCAAAACATGCTTACATTTCAGGGAATAAGTTATGGGAAGAAGTTGAAAGTGGTAAAGTTAAGAGCTTTTTAAGTTCTAAAATTGAAAATGGTTCAGATTCTTGTTTAAATTCAGTTACAGTTTCTGGGTTTGAGTTTAAGGAAAAGTTAAAAGGGGTTATGGTTTTGCCTTGTGGGTTGACACTTTGGTCTCATGTTACTGTTGTTGGGACACCACGTTGGGCTCATGTTGAGAATGATTCAAAGATTGGGGTTGTGAAAGATCGCGATGAGGCGATTATGGTTTCGCAGTTTATGTTGGAGTTGCAAGGTTTGAAAGCTGTTGATAATGAGGAACCACCTAGGATATTACATTTTAATCCTAGGATTAAAGGGGATTGGAGTGGGAAGCCTGTAATTGAACAGAATACTTGTTATAGGATGCAATGGGGGACTGCTCTTAGGTGTGAGGGATGGAAGTCTAGAGCTGATGAGGAAACTGTTGATGGACAGGTGAAATGTGAGAAATGGATTCACAATGATCATAATCAATCGGAAGAGTGGAAGGCGACATGGTGGTTGAACAGACTGATGGGGCGAAAAAAAGTTGTGTCCATAGACTGGCCATATCCTTTTTCTGAGGGGAAATTATTTGTTCTCACCATTAGTGCTGGCTTGGAAGGTTACCATATTACTGTGGATGGGAGGCATGTAACGTCCTTTCCGTATCGCACAGGATTTGCTCTTGAGGATGCTACTGGACTAGCCATAAACGGAGACGTCGATGTGTACTCTATATATGCTGCTTCATTACCTACATCACATCCTAGCTTTGCTCCGCAGATGCATCTTGAATTGCTTCCTCAGTGGAAGGCTCCACCTATTCTCGGTGTGAACATAGAGCTTTTCATTGGTATCCTTTCTGCTGGCAACCATTTTGCCGAACGTATGGCAGTGAGGAAGTCGTGGATGCAACATAAGCTAATCAAATCATCACATGTTGTCGCTCGATTTTTTGTAGCATTGCATGGAAGGAAAGATATAAATGTGGAAATAAAGAAAGAAGCCGAGTATTTTGGCGATATTATTATAGTTCCCTACATGGATCATTATGACCTTGTTGTTTTGAAGACCATAGGTATATGTCAATATGGGATTCGCACAGTGGCTGCTAAGTATATCATGAAGTGTGACGATGACACATTTGTTAGAGTCGATTCTGTCATAAGCGAAGCAAGAAAAGTTCAAAGTGGTAAAAGCCTTTATATGGGAAATATGAATTACCACCACAAGCCTCTTCGCGATGGAAAATGGGCTGTAAATTACGAGGAATGGATAGAGGAAGAGTATCCTCCCTACGCTAATGGTCCGGGTTACATCATCTCATCTGACATTGCTCAGTACATTACATCTGAATTTGAACGGCAAAAATTAAAATTATTTAAAATGGAAGATGTGAGCATGGGAATGTGGGTAGAGCAATTCAACAGCTCAAGAGAAGTGGAGTATGTACACAGCTTTAAGTTTTGCCAATTTGGGTGCATCGAAGATTACTACACTGCGCATTACCAATCTCCGAGACAAATGACATGCATGTGGGATAAATTGCAACAACAAGGTAAACCACTTTGTTGCAACATGAGATGA 1851 0.4036 MMMILYMLFMSFEIPLAFKAGLGSETVAIGFLTEAMPLLAEQNLKKIRPFRLQLKKVSTLSFNNSFEGVSELYKVAKHAYISGNKLWEEVESGKVKSFLSSKIENGSDSCLNSVTVSGFEFKEKLKGVMVLPCGLTLWSHVTVVGTPRWAHVENDSKIGVVKDRDEAIMVSQFMLELQGLKAVDNEEPPRILHFNPRIKGDWSGKPVIEQNTCYRMQWGTALRCEGWKSRADEETVDGQVKCEKWIHNDHNQSEEWKATWWLNRLMGRKKVVSIDWPYPFSEGKLFVLTISAGLEGYHITVDGRHVTSFPYRTGFALEDATGLAINGDVDVYSIYAASLPTSHPSFAPQMHLELLPQWKAPPILGVNIELFIGILSAGNHFAERMAVRKSWMQHKLIKSSHVVARFFVALHGRKDINVEIKKEAEYFGDIIIVPYMDHYDLVVLKTIGICQYGIRTVAAKYIMKCDDDTFVRVDSVISEARKVQSGKSLYMGNMNYHHKPLRDGKWAVNYEEWIEEEYPPYANGPGYIISSDIAQYITSEFERQKLKLFKMEDVSMGMWVEQFNSSREVEYVHSFKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQQQGKPLCCNMR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02460 616 Gene3D - 367 602 - -
Trre9g02460 616 FunFam Hydroxyproline O-galactosyltransferase GALT2 251 335 - -
Trre9g02460 616 Pfam Galactosyltransferase 383 564 IPR002659 GO:0006486|GO:0016020|GO:0016758
Trre9g02460 616 FunFam Hydroxyproline O-galactosyltransferase 361 604 - -
Trre9g02460 616 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 303 567 IPR002659 GO:0006486|GO:0016020|GO:0016758
Trre9g02460 616 Gene3D - 119 335 - -
Trre9g02460 616 FunFam Hydroxyproline O-galactosyltransferase GALT4 126 244 - -
Trre9g02460 616 SMART Gal_bind_lectin_2 131 336 IPR001079 GO:0030246
Trre9g02460 616 CDD GLECT 131 334 IPR001079 GO:0030246
Trre9g02460 616 Pfam Galactoside-binding lectin 128 335 IPR001079 GO:0030246
Trre9g02460 616 SUPERFAMILY Concanavalin A-like lectins/glucanases 129 335 IPR013320 -
Trre9g02460 616 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 127 337 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02460 Trre-Chr9 29270130 29274785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02460 5 616 Glycosyltransferase AT1G74800 60.587 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02460 K20843 - gmx:100803219 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02460 9 29270130 29274785 Trre9g02460 9 29270130 29274785 ECH
Trre9g02460 9 29270130 29274785 Trre15g02179 15 17763904 17767923 PCT