Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02179 ATGAAGAAAGAGAAGCTAAACCCATTTTTACTCTTTCCAAATAAGCCTAAACTTGTTCACATTTTCATGACCCTTATGCTTCTTTATTTGATCTTCACAACCTTTGAATTCAAAACTTTTGAGTCTGTTTCAGTGTCTTCAATTCTTAGGAATGAAATCCAAAATACCCATCATAGAAAAGCTTTAAACTTTGCTTCAGATGAAGCTTTTGGTGTTTACCAAGGTTCACTGCATCGAAAACCAATGCAAGAGTTGCAAAAAGTTTCCACCTTGAGTTTCAATGAAGGTGATTTGAATGATTTGAATGAAACTGGTTTGGAAAAAGACAAATTTTCTGAGATTCAAAGGGATGTTAAGGTAGCTTGGATTAAAGGGAAGAGAATGTGGGAAGAAATTCTGAGTTTGGAATCTGAGAATGTGACTAAGTTCATGTTTGAGAATCAGAAGAATCATTCTGATTCATGTCAGCATTCGATTTCGATATCTGGGTCTGAATTAAGGAACCAGAAAGGGATCATGGTGATTCCTTGTGGGTTGACTTTATGGTCTCATGTTACTGTTGTCGGGACGCCGCGATTGGCTCATTGGGAGAGTGATCCTAAGATAACTGTGGTGAAAGATGAGGAGGAAAAGGTGTTGGTGTCACAGTTTATGATGGAACTTCAAGGATTGAAGGTAGTTGATGAAGAGGAACCACCTAAGATATTGCATTTCAATCCTAGGTTGAAAGGTGATTATAGTGGAAAGCCTGTGATTGAACAGAATACTTGTTATAGGATGCAATGGGGTTCTTCACTCAGATGTGAGGGATGGAAATCTAGGGCTGATGAAGATACTGTCGATGGACAGGTGAAATGTGAAAAGTGGATTCGCGATGATAATAGCCATTCAGAAGAGTCTAAGGCAACATGGTGGTTACCTAGACTGATGGGGCGAAAACACAAGATCACTTTAGATTGGCCTTACCCTTTTACAGAGGGAAGATTATTTGTTCTCACCTTAACCGCAGGCTTGGAAGGTTACCATGTGAGTGTTGACGGAAAGCATGTGACGTCTTTTCCCTATCGCACGGGTTTTTCTCTCGAGGACGCTACTGGTCTATCCATAAAAGGGGATGTTGATGTGCACTCTATATATGCTGCTTCGTTACCAACATCACATCCAAGTTTTGCACCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTATTCTCGATGTGAACGTGGAGCTTTTCATTGGAATACTTTCTGCCGGCAACCATTTTGCCGAACGAATGGCAGTAAGAAAATCGTGGATGCAACATAAGCTAATCAAATCTTCACATGTTGTAGCTCGATTCTTTGTTGCTTTGCATGGAAGGAAAGATATAAATTTGGACATAAAGAAAGAAGCCGATTATTTTGGTGATATTATTATAGTCCCATATATGGATCATTATGACCTTGTTGTGGTGAAGACCATAGCTATCGCTGAATACGGGATTCGTAACGTAGCTGCTAAGAATATCATGAAATGCGATGATGACACGTTTGTTCGATTGGATTCTATCATCAGTGAAGTAAGAAAAGTAGGAATTGGTAGAAGTCTCTACATTGGCAATATGAATTACCACCATACGCCCCTTCGCGATGGTAAATGGGCAGTCACGTATGAGGAATGGGCGGAAGAAGAGTATCCTACCTATGCTAATGGTCCAGGTTATATAATCTCATCAGACATTGCTAAGTTCATTGTATCCACCTTCGAGGAGCACAAGTTAAAATTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTAGAACAATTCAACAACTCAACAGAAGTTGAGATTGTGCACAGCTACAAGTTCTGCCAATTTGGGTGCATTGAAGGTTACTACACTGCACATTACCAATCTCCAAGACAAATGACATGTATGTGGGATAAGTTGCAACACAAGGGAAAACCACTATGTTGCAATAACAGATAA 1983 0.3989 MKKEKLNPFLLFPNKPKLVHIFMTLMLLYLIFTTFEFKTFESVSVSSILRNEIQNTHHRKALNFASDEAFGVYQGSLHRKPMQELQKVSTLSFNEGDLNDLNETGLEKDKFSEIQRDVKVAWIKGKRMWEEILSLESENVTKFMFENQKNHSDSCQHSISISGSELRNQKGIMVIPCGLTLWSHVTVVGTPRLAHWESDPKITVVKDEEEKVLVSQFMMELQGLKVVDEEEPPKILHFNPRLKGDYSGKPVIEQNTCYRMQWGSSLRCEGWKSRADEDTVDGQVKCEKWIRDDNSHSEESKATWWLPRLMGRKHKITLDWPYPFTEGRLFVLTLTAGLEGYHVSVDGKHVTSFPYRTGFSLEDATGLSIKGDVDVHSIYAASLPTSHPSFAPQMHLELLPQWKAPPILDVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSHVVARFFVALHGRKDINLDIKKEADYFGDIIIVPYMDHYDLVVVKTIAIAEYGIRNVAAKNIMKCDDDTFVRLDSIISEVRKVGIGRSLYIGNMNYHHTPLRDGKWAVTYEEWAEEEYPTYANGPGYIISSDIAKFIVSTFEEHKLKLFKMEDVSMGMWVEQFNNSTEVEIVHSYKFCQFGCIEGYYTAHYQSPRQMTCMWDKLQHKGKPLCCNNR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02179 660 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 348 609 IPR002659 GO:0006486|GO:0016020|GO:0016758
Trre15g02179 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 174 379 IPR013320 -
Trre15g02179 660 Gene3D - 170 379 - -
Trre15g02179 660 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 171 381 IPR001079 GO:0030246
Trre15g02179 660 Gene3D - 410 644 - -
Trre15g02179 660 Pfam Galactosyltransferase 427 607 IPR002659 GO:0006486|GO:0016020|GO:0016758
Trre15g02179 660 Pfam Galactoside-binding lectin 172 379 IPR001079 GO:0030246
Trre15g02179 660 CDD GLECT 175 378 IPR001079 GO:0030246
Trre15g02179 660 SMART Gal_bind_lectin_2 175 380 IPR001079 GO:0030246
Trre15g02179 660 FunFam Hydroxyproline O-galactosyltransferase GALT2 295 379 - -
Trre15g02179 660 FunFam Hydroxyproline O-galactosyltransferase 405 648 - -
Trre15g02179 660 FunFam Hydroxyproline O-galactosyltransferase GALT4 170 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02179 Trre-Chr15 17763904 17767923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02179 2 660 Glycosyltransferase AT1G74800 57.625 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02179 K20843 - gmx:100814480 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g02460 9 29270130 29274785 Trre15g02179 15 17763904 17767923 PCT