Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01397 ATGAGAGTGATTGGTGGAAATTCATCAGCTGGATTAAAAGCTAGCGATGTAGATCTACGGCTGATATTTCATCAAGGGGTACCATCAGATGGTACCAAGTTTGCTTATGACAATATTCAAAACATATTGGCCTTATCTACCAATGATGGGAGGATTAAATTATTTGGTAAAGATAATACTCAAGTCCTACTTGAATCTAACAAGCCAGTGCATAGCAAATTTTTACAGTTCATCAAGAATCAAGGCATCCTTATAAATGTTACTTCAAATAACCATATTGAGGTTTGGGATATAGACAAGAAACTGTTGTGTGACTTGTACATTGTTAAAGAAGAAATCACTTCTTTTGTAATCATTCAGCACAGCTTCTACATGTATGTTGGAGTTTCTAGTGGTGATATTTCAGTTTTGAAACTTGATCAAGATTTGCATGTGGAAAAAATGAATTACACTATACCTCTCTCAGCTTCTTTTGGGAATTTAACTGAAGTGTTTGATGATACTGTTGTGACACACATCTTGCCTCAACCAGCAGCTGAAACTAAGAGAGTTCTCATAATCTTTAGAAATGGTCAAATAATATTATGGGATGTTCAAGAAAGCATATGCATTTTCAGAAGTGGTGGAAATGTGTCACAGCAACTACATAATGAAACAAAGAAAGTGTCTTGTGCATGTTGGGTGTGTCCTTTTGGAAGCAAAGTAGCTGTAGGGTACAGCAATGGAGAGCTTTACATTTGGAGTATTCCTTCTCTAACCATAGGAAATGTCTCAGCATCTGATTATAGCAGCAAAAACATTCCTATGTTCAAATTTAACTTAGGATATAAATCAGATAAATCTTGTATAGTATCAGTAAAATGGATATATGCTGAAGGAAAAGCTAGTAGATTATATGTCTTGGGAGCTTCTCACTCAATGCAGGTAGTGTTGTTGAATGAACATACCGAAACTCGCACGATTAAGCTAGGACTATATTTGTCTGAAGTGTGTGTTGACATGGAGATTATATCAACCTCAAATGAGCAAAGCAAACATAAACAAAATTCTTTGATTTTTCTTGGGAAATCAGGCCATGTGTATCTGTATGATGATAATATGATTGAAAGGTATTTATTGCAATGCCAATGTAAGTCCACTCCCTCAGTGCCAAAGGAAGTTATGGTGAAGTTACCACTAGCTGACTCAAGCATCACCGTAGCAAAACTCATCTCCAACACTACCAATGGGTTTTATTCTCAAGATGAGTATTACAGTCAGATGTTAAAAAATTATCCACAGCTTATTACAATTGAAACAAATCAAAAAGAAGGGATTAACCTGAGTTCTGCCAACTTCTCTAGATTTTCAAACATTAAAAACTTGTACATAACTGGACACCATAATGGAGCCATTACATTTTGGGATGCATCATGTCCCTTTTTCATCCCAGTTCTGCAATTAAAGCAACAGAGTGAAAATGATCATTCTTTAAGTGGTGTACCCTTGACAGAATTATATTTTGACATAAACACTCCTCTCCTTGTTTCTGGTGATCAGAGTGGAATGGTTCGTATATTCAGATTCAAACCCGAACCATACGCCTACAACAGTTTCATGTCTCTTACAGGAAGTACAAAGAAAGGGGTTGATCATGTTATCCGGAGTGTGAAACTTATAAAGACTATTGGTGCCGTAATTTGTATGAATATAGATCATAGCTCAGGGCATCTTGCTGTTGGTTCTGATCAAGGAAATGTTTCAGTTATTAACACAGACGGTCCAACTCTGTTGTATCAAAAACATATTGCAAGTGAAATTTCTACTGGTATCATCTCTCTGCAGTTCATAACATGTAGTTTATATGGTTTCTCAAAAAATATCTTAGCGGTTGGAACAAAGGACTCGTCGGTTTTGGCACTGGATAGTGAAACTGGAAATACACTTAGCAGTGGAACTGTTCATCCTAAGAAGCCATCCAAAGCTTTATTTATGCAGGTTTTGGATGAACAAGGTGAACCAATTACAAAAGATAGCTTATATTTGAGAGAAGGGAATCATATTGAGGATGCAACAACAAAGAAATTGTACATTTTGTTATGTTCTGAGAAGGCTTTATATATATATTCATTTGAGCATGCTCTACAGGGAATCAAAAAGGTGGTTTACAAAAAGAAGTTCAATCCTTCTTCCTGTTGCTGGGCATCAACATTTCACAGCGCCTCTGGTATTGGACTCGTACTACTTTTCACCACTGGAAAAGTAGAATTAAGGTCTTTACCAGAACCATCTTTGATAGTGAATACTTCGATTAAAGGTTTTACTTATTTACATCCGAAATTGAAATCATTTTCCGACAGCCAGATATGTTGTTCATCCAGCGGAGACCTTGTTTTGGTGAATGGTGACCAAGAAATTTTTGTTGTCTCATTGTTGGTCCAGAGGAATATTTTCAGGCTTTTGGACTCTGTTGGATGCATCTACAGGAAGGATAGAATGCTATCACAAGATCTTGTTCCTTACCAGGTCATACCTAAGGAAAAGAAAAAGGGCATGTTCAACTCTGTTGTCAAAGATTTTACTGGCAGTAAAGAAAAGCACATACCCCTCATGGAAAATGAAGATCCCAAAGAAAGTATCCAGGAACTCTCTGCAATATTTTCATATGCAAATTTTCCACCGGATGCCAACAATACTGTAGATGAAAATCAGCTAGAATCAAACTTAGATGACACGAATCAGGAGAATCATAGAGAAATGCGCAAAGAACAAAGCATATTAGGAACTCTTAATAAGAAGAAATTGGCTGGCAAATTTCAGGCTCTAAAAGGAAAAGTGAAAGAGATGAAGGGAAACAACCAGAAAGCATCAGATAAGGAAGAGCAACAAGATGAGAAAGCTGGTGCAGTCAATCAAATTAAGAAGAAATATGGATTTTCTTCTTCGTCCGGTGAAACAAGTGTTGCTAAATTAGCAGAAAGCAAGCTGCAGGAAAACATAAGGAAATTACAGGGTATTGACCTACATACTACCGAGATACAAAATACAGCAAAATCATTTTTATCAAGGGCAAAACAGGTGCTGAGAAATGCTGAACAGGATAAACGAAGTTGA 3093 0.366 MRVIGGNSSAGLKASDVDLRLIFHQGVPSDGTKFAYDNIQNILALSTNDGRIKLFGKDNTQVLLESNKPVHSKFLQFIKNQGILINVTSNNHIEVWDIDKKLLCDLYIVKEEITSFVIIQHSFYMYVGVSSGDISVLKLDQDLHVEKMNYTIPLSASFGNLTEVFDDTVVTHILPQPAAETKRVLIIFRNGQIILWDVQESICIFRSGGNVSQQLHNETKKVSCACWVCPFGSKVAVGYSNGELYIWSIPSLTIGNVSASDYSSKNIPMFKFNLGYKSDKSCIVSVKWIYAEGKASRLYVLGASHSMQVVLLNEHTETRTIKLGLYLSEVCVDMEIISTSNEQSKHKQNSLIFLGKSGHVYLYDDNMIERYLLQCQCKSTPSVPKEVMVKLPLADSSITVAKLISNTTNGFYSQDEYYSQMLKNYPQLITIETNQKEGINLSSANFSRFSNIKNLYITGHHNGAITFWDASCPFFIPVLQLKQQSENDHSLSGVPLTELYFDINTPLLVSGDQSGMVRIFRFKPEPYAYNSFMSLTGSTKKGVDHVIRSVKLIKTIGAVICMNIDHSSGHLAVGSDQGNVSVINTDGPTLLYQKHIASEISTGIISLQFITCSLYGFSKNILAVGTKDSSVLALDSETGNTLSSGTVHPKKPSKALFMQVLDEQGEPITKDSLYLREGNHIEDATTKKLYILLCSEKALYIYSFEHALQGIKKVVYKKKFNPSSCCWASTFHSASGIGLVLLFTTGKVELRSLPEPSLIVNTSIKGFTYLHPKLKSFSDSQICCSSSGDLVLVNGDQEIFVVSLLVQRNIFRLLDSVGCIYRKDRMLSQDLVPYQVIPKEKKKGMFNSVVKDFTGSKEKHIPLMENEDPKESIQELSAIFSYANFPPDANNTVDENQLESNLDDTNQENHREMRKEQSILGTLNKKKLAGKFQALKGKVKEMKGNNQKASDKEEQQDEKAGAVNQIKKKYGFSSSSGETSVAKLAESKLQENIRKLQGIDLHTTEIQNTAKSFLSRAKQVLRNAEQDKRS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01397 1030 SMART WD40_4 424 469 IPR001680 GO:0005515
Trre9g01397 1030 SMART WD40_4 208 248 IPR001680 GO:0005515
Trre9g01397 1030 SMART WD40_4 549 584 IPR001680 GO:0005515
Trre9g01397 1030 SMART WD40_4 484 521 IPR001680 GO:0005515
Trre9g01397 1030 SUPERFAMILY WD40 repeat-like 33 524 IPR036322 GO:0005515
Trre9g01397 1030 MobiDBLite consensus disorder prediction 942 961 - -
Trre9g01397 1030 Pfam Lethal giant larvae(Lgl) like, C-terminal 709 810 IPR013905 -
Trre9g01397 1030 Gene3D - 32 379 IPR015943 GO:0005515
Trre9g01397 1030 SUPERFAMILY WD40 repeat-like 445 803 IPR036322 GO:0005515
Trre9g01397 1030 FunFam Syntaxin-binding protein 5 isoform A 12 170 - -
Trre9g01397 1030 Coils Coil 932 959 - -
Trre9g01397 1030 CDD R-SNARE_STXBP5_6 965 1022 - -
Trre9g01397 1030 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 8 1023 - -
Trre9g01397 1030 Coils Coil 895 915 - -
Trre9g01397 1030 Gene3D - 405 661 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01397 Trre-Chr9 11940629 11947903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01397 - - cam:101494027 1682.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01397 9 11940629 11947903 Trre9g01397 9 11940629 11947903 ECH
Trre9g01397 9 11940629 11947903 Trre15g02512 15 21028773 21041123 PCT