Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02512 ATGTTTGTTAAGAAACTCGTCGAGAAAGCTAATTCCATAAAAAAGCCTGGTGGAAATTCAGCAGAAGGGTTAAAAGCTAGTGATGTGGATCCAAGAGTGGTATTTCATCAAGGGATACCATCAGGTGGTGCCAAGTTTTCCTATGACCCCATTCAGAAGATACTTGCTCTTTCTACAAAGGATGGCCGGATTAAACTATATGGAAAAGATAATGCTCAAGCCTTGCTTGATTCTACTGAGAATCTACCTAGCAAGTTTTTACAGTTCATCCAGAACCAAGGCATTCTCTTAAATGTCACTTCCAATAATCATATTGAGGCAATTTGGGACATAGAGAAGAAACTGTTGTCTGATGTGTATGTTGCTAAAGAAGAAATCACTAGTTTTGCAGTCATTCAACATAGCCTCTATATGTATATCGGACATTTTAATGGTAATATATCGGTTTTGAAGCTTGACCAAGATCCATTGCATATAGTTAAGACGAAATACACCATACCCTTTTCTGCTTCTTATGGGAATTCTGAAGTGTCCGATGATACTACTGTGATGCATATACTGCCCCAACCAGCAGCCGAAAGTAAGAGGGTTCTTGTGATCTTTCGAAATGGCCAAATAATATTATGGGATATTCAGGAAAGCAGAACTATTTTCAGAACTGGTGGAAATATTTTGCAACCACTGCATAATAATGAAACAAAGAAAGTGACTTCTGCGTGTTGGTCGTGTCCTTTTGGAAGTAAAATAGTGGTTGGATACAACAATGGAGAAATCTTCATTTGGAGCATCCCTTCTCTAAATATAGGAAATGGTTCATCTGCATCTGAGTATTATAGTAGTCAAAGCACTCCTTTACTCAAACTTAACTTAGGATACAAGTCAGAGAAAATTTCAATAGCATCGATTAAGTGGCTTTATGCCGGAGGAAAGGCTAGTCGATTATATGTCATGGGAGCTTCTGATTATGCCAGTTCAAACTCGTTGCAGGTAGTGTTGTTGAATGAGCATACAGAATCTCGCACGATTAAGCTGGGACTTCTTTTATCTGAATGTTGTGTTGACATGGAGATTATATCAACTTCATCCGAACAAGGCAAACAGCATAAACAAGATTCTTTCCTTTTGCTAGGGAAGTCAGGCCATGTGTATCTATACGATGATACTTTCATCGAAAGGTATCTGCTACAATGCCAATCTAAGTCTACACCTTCACTTCCTAAAGACGTGATTGCGAAGTTACCACTGGCAGATTCAAGCATCACAACATCAAAGTTCATTTCCAACAATTCCAATGTGTTTTATTCTGAAGATGAGTACTACAGGCAGGTGGTGAAAAATCATCCACTTTTTGTCCCTGTTGAAACAAATCCAAAAGATGGAATTAGTCCAAGTTCTGCAAAATTTTCTGGATTTTCAAAAGTTCAAAATTTGTACATAACTGGACACAGTAATGGAGCTGTAAACTTCTGGGATGCTTCCTGCCCTCTTTTCACCCCAATTTTGCAATTAAAACAGCAGAGTGAAAATGACTTTTCATTAAGTGGTATACCCTTGACAACATTGTACTTTGATATCAACTCTCCTCTTCTTGTTACCGGTGACCAAAATGGAACGGTTCGCATTTTTAGATTCAAACCTGAACCATATGCCACCAACATCTTTAGTGGTTCAAAGAAAGGAATTGATCATATTATCCAAAGTGTGAAAATTGTAAAGATTAACGGTGCCGTAACTTCTGTGAACATTGATCATAGCTTGTCGCGTCTTGCAGTTGGTTCTGATCAAGGACATGTTTTGGTTTTTAATATGGATGGCCTAACTTTGTCATATCAGAAACATATTGCAAGTGAAATTGCTTCTGGTATCACATCTCTGCAGTTCCTAACATGCAGTTTGCATGGTTTTGATAAAAACATTTTAGCGGTAGGAACAAAAGATTCTTCTGTTCTAGCACTTGATAACGAAACTGGTAACACGATGAGCACCGGAACTGTTCAACCTAAGAAGCCCTCTAAAGCTCTATTTGTGCAGGTTTTCGATGGACAAGGTGAACAATTAACAGGATCAGTTACGAAAGATGGATTAGACTTGAATGAAGCGCATAATATTGAGAATGCAACAACAAAGCAATTGTACATTCTGCTTTGTTCAGAGAAAGCTTTATATGTCTATTCATTAGTGCATGCAATTCAGGGAGTTAAAAAAGTGCTTCACAAGAAGAAGTTCCATTCGTCTTCCTGTTGTTGGGCATCAACATTTTACAGTCCCTCTGGTGTTGGGCTTGTACTCATTTTCACCGACGGAAGAGTAGAATTAAGGTCTTTGCCAGAGTTATCCCTGATTGTGGAGACTTCAATTAGAGGTTTCAATTATTCACCTCCAAAATCAAAGTCATTTTCTGATTGGCAAATATGTTCTTCATCCAAAGGAGATCTTGTTTTGGTGAATGGAGACCAAGAAATTTTTGCTGTCTCGGTGTTGGTCCAAAGGAGTATTTTCAGGATTTTGGATTCTGTTAGCTGCATCTACACGAAAGAAATGATGCTGTCACAAGAAGAGCTTATCCCGGCCCAAGTCATTCATAAGGAAAAGAAAAAGGGTTTATTCAGCTCTTTCTCTGTCAGTAAAGAAAAGCATGTCCCCGCCATGGAAACAGAAGATTCTAGAGAAAGTATCCGAGAACTCTCAGTGATCTTTTCAAAAGAAAATTTTCCTTGTGATGCTGATGATAATGATAACCTGACTATCGATGAAGACGAGGTTGAATTAAACATAGATGACATTGATCTCGATGATCATGTAGAAAAACGCAAAGATCATGGTATATTAGGACTAGGAGCTCTTAATAAGAAGAAATTGACTGGAAAGTTTAATGCTCTAAAAGGAAGATTGAAAGAGATGAAAGGAAACATCCAGAAAACATCAGTTAAGGAAGAGCAACAAGAAGAACAACCTGCTACAGTCGATCAAATTAAGAAGCGGTACGGGTTTTCTTCATCTTCCAATGAAACAAATGCTGCTAAAATGGCAGAAAGTAAGCTACAAGAGAACTTGAAAAAATTGCAGGGTATTAACTTAAGAACTACAGAAATGCAAGATACAGCAAAATCATTTTCATCAATGGCAAACCAAGTACTGCGAACTGCTGAACAGCAACAAGACAAAAGAAGTTGA 3174 0.3796 MFVKKLVEKANSIKKPGGNSAEGLKASDVDPRVVFHQGIPSGGAKFSYDPIQKILALSTKDGRIKLYGKDNAQALLDSTENLPSKFLQFIQNQGILLNVTSNNHIEAIWDIEKKLLSDVYVAKEEITSFAVIQHSLYMYIGHFNGNISVLKLDQDPLHIVKTKYTIPFSASYGNSEVSDDTTVMHILPQPAAESKRVLVIFRNGQIILWDIQESRTIFRTGGNILQPLHNNETKKVTSACWSCPFGSKIVVGYNNGEIFIWSIPSLNIGNGSSASEYYSSQSTPLLKLNLGYKSEKISIASIKWLYAGGKASRLYVMGASDYASSNSLQVVLLNEHTESRTIKLGLLLSECCVDMEIISTSSEQGKQHKQDSFLLLGKSGHVYLYDDTFIERYLLQCQSKSTPSLPKDVIAKLPLADSSITTSKFISNNSNVFYSEDEYYRQVVKNHPLFVPVETNPKDGISPSSAKFSGFSKVQNLYITGHSNGAVNFWDASCPLFTPILQLKQQSENDFSLSGIPLTTLYFDINSPLLVTGDQNGTVRIFRFKPEPYATNIFSGSKKGIDHIIQSVKIVKINGAVTSVNIDHSLSRLAVGSDQGHVLVFNMDGLTLSYQKHIASEIASGITSLQFLTCSLHGFDKNILAVGTKDSSVLALDNETGNTMSTGTVQPKKPSKALFVQVFDGQGEQLTGSVTKDGLDLNEAHNIENATTKQLYILLCSEKALYVYSLVHAIQGVKKVLHKKKFHSSSCCWASTFYSPSGVGLVLIFTDGRVELRSLPELSLIVETSIRGFNYSPPKSKSFSDWQICSSSKGDLVLVNGDQEIFAVSVLVQRSIFRILDSVSCIYTKEMMLSQEELIPAQVIHKEKKKGLFSSFSVSKEKHVPAMETEDSRESIRELSVIFSKENFPCDADDNDNLTIDEDEVELNIDDIDLDDHVEKRKDHGILGLGALNKKKLTGKFNALKGRLKEMKGNIQKTSVKEEQQEEQPATVDQIKKRYGFSSSSNETNAAKMAESKLQENLKKLQGINLRTTEMQDTAKSFSSMANQVLRTAEQQQDKRS 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02512 1057 SMART WD40_4 406 491 IPR001680 GO:0005515
Trre15g02512 1057 SMART WD40_4 504 543 IPR001680 GO:0005515
Trre15g02512 1057 SMART WD40_4 112 151 IPR001680 GO:0005515
Trre15g02512 1057 SMART WD40_4 564 602 IPR001680 GO:0005515
Trre15g02512 1057 SMART WD40_4 221 262 IPR001680 GO:0005515
Trre15g02512 1057 SMART WD40_4 603 653 IPR001680 GO:0005515
Trre15g02512 1057 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 9 1048 - -
Trre15g02512 1057 SUPERFAMILY WD40 repeat-like 125 666 IPR036322 GO:0005515
Trre15g02512 1057 SUPERFAMILY DPP6 N-terminal domain-like 573 819 - -
Trre15g02512 1057 Gene3D - 464 837 IPR015943 GO:0005515
Trre15g02512 1057 Coils Coil 950 984 - -
Trre15g02512 1057 SUPERFAMILY Putative isomerase YbhE 32 155 - -
Trre15g02512 1057 Pfam Lethal giant larvae(Lgl) like, C-terminal 721 832 IPR013905 -
Trre15g02512 1057 CDD R-SNARE_STXBP5_6 990 1047 - -
Trre15g02512 1057 MobiDBLite consensus disorder prediction 1032 1050 - -
Trre15g02512 1057 Gene3D - 42 387 IPR015943 GO:0005515
Trre15g02512 1057 MobiDBLite consensus disorder prediction 1032 1057 - -
Trre15g02512 1057 FunFam Syntaxin-binding protein 5 isoform A 24 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02512 Trre-Chr15 21028773 21041123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02512 - - gmx:100811900 1647.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02512 15 21028773 21041123 Trre15g02512 15 21028773 21041123 ECH
Trre9g01397 9 11940629 11947903 Trre15g02512 15 21028773 21041123 PCT