Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01354 ATGCCTCGACCCGGAGACGGAACACCTCGAAACGTAACACTAATCCCCGGCGACGGAATCGGACCTTTAGTAACCGGAGCAGTTGAGCAAGTAATGGAAGCAATGCATGCGCCGGTATACTTCGAGAAATTCGAAGTGCATGGTAACATGAAAACGATGCCAAATGAAGTAATGGAATCGATTAAAAGGAATAAGGTTTGTTTGAAAGGTGGACTTGCTACTCCTATGGGTGGTGGTGTTAGTTCTCTTAATGTGCAATTGAGGAAGGAGCTTGATCTTTATGCTTCTCTTGTTAATTGCTTTAATCTTCCTGGTTTGCCGACGCGGCATGATAATGTTGATATTGTTGTGATTAGGGAGAATACTGAAGGTGAATATGCTGGACTTGAACATGAGGTTGTTCCTGGTGTTGTCGAAAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTATCTAAATAACAGAAAGAAGGTGACTGCTGTACACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTACCCTGGAATCAAATATAATGAAATTATCGTAGATAACTGTTGCATGCAGCTTACTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACTCCCAATCTTTATGGAAATCTTGTTGCAAATACAGCGGCAGGCATTGCTGGAGGCACTGGTGTCATGCCCGGAGGTAATGTTGGAGCTGACCACGCTGTATTTGAACAAGGTGCTTCAGCAGGAAATGTCGGCAAGGATAAAGTAGTAAAGGAAAAGAAAGCCAACCCTGTGGCACTCCTCCTTTCGTCTGCAATGATGCTTAGACATCTCCAGTTTCCTGTTTTTGCTGAACGATTGGAAAGTGCTGTGAAACGAGTCATTTTAGAGGGAAAATACCGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTGATAGATGCATTACAATAA 1020 0.4324 MPRPGDGTPRNVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFEVHGNMKTMPNEVMESIKRNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLTSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKVVKEKKANPVALLLSSAMMLRHLQFPVFAERLESAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01354 339 Gene3D Isopropylmalate Dehydrogenase 5 338 - -
Trre9g01354 339 Pfam Isocitrate/isopropylmalate dehydrogenase 11 334 IPR024084 -
Trre9g01354 339 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 10 338 - -
Trre9g01354 339 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 9 338 - -
Trre9g01354 339 SMART Iso_dh_2 11 334 IPR024084 -
Trre9g01354 339 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 1 338 - -
Trre9g01354 339 NCBIfam isocitrate dehydrogenase (NAD(+)) 8 337 IPR004434 GO:0006099
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01354 Trre-Chr9 11542906 11546418 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01354 K00030 - gmx:100778831 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01354 9 11542906 11546418 Trre9g01354 9 11542906 11546418 ECH
Trre9g01354 9 11542906 11546418 Trre15g02534 15 21298073 21304724 PCT