Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02534 ATGGCACGAAGATCCATACCGATCCTCAAACACCTCTTATCAACCCGATCTCAATCCGAACCATTCAATTCCACCTTCAAACGATGCGTAACCTATATGCACCGTCCCGGCGACGGAACACCGCGTCCAGTAACCCTAATCCCCGGCGACGGGATCGGACCACTTGTAACCGGCGCCGTTGAACAAGTCATGGAAGCGATGCACGCGCCTGTTTATTTCGAGAAATTTATTGTTCATGGTGATATGAAAGCTGTTCCTGCTGAGGTTCTTGAATCGATCCGTAAGAATAAGGTTTGTCTTAAAGGTGGATTGATTACTCCTATGGGTGGTGGTGTTAGTTCTCTTAATGTTCAGCTTAGGAAAGAGCTTGATCTATATGCTTCTCTTGTTAATTGCTTTAATCTTCCTGGTTTGTCTACGAGACATGATAATGTTGATATTGTTGTTATTCGGGAGAATACTGAAGGGGAGTATGCTGGTCTTGAACATGAGGTTGTTCCCGGCGTCGTCGAAAGCCTTAAGGTGATAACGAAGTTCTGTTCTGAGCGTATTGCTAAATATGCATTTGAGTATGCTTACCTGAATAACAGAAAGAAAGTGACTGCTGTCCACAAAGCAAATATAATGAAGCTTGCAGATGGTTTGTTCTTGGAATCTTGTCGAGAGGTCGCCACCAAGTATCCTGGCATTAAATATAATGAAATTATTGTGGATAATTGCTGCATGCAGCTTGTTTCGAAGCCTGAACAGTTTGATGTCATGGTCACCCCAAATCTGTACGGAAATCTAGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTTATGCCAGGAGGTAATGTTGGGGCTGAGCATGCAGTTTTTGAGCAGGGTGCTTCAGCAGGAAATGTTGGTAATGAAAAAGTAGCAGCACAAAAGACAGCCAATCCAGTGGCACTCCTTCTCTCATCAGCTATGATGCTTAGGCATCTCCAATTTCCTGCATTTGCTGACCGTTTGGAAGTTGCCGTTGAAAAAGTCATTCTAGAAGGCAAGTATCGGACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAAGTTGTCGATGCAGTAATAGATGCTTTAGATTGA 1116 0.4435 MARRSIPILKHLLSTRSQSEPFNSTFKRCVTYMHRPGDGTPRPVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFIVHGDMKAVPAEVLESIRKNKVCLKGGLITPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLSTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGNEKVAAQKTANPVALLLSSAMMLRHLQFPAFADRLEVAVEKVILEGKYRTKDLGGTSTTQEVVDAVIDALD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02534 371 Gene3D Isopropylmalate Dehydrogenase 28 370 - -
Trre15g02534 371 NCBIfam isocitrate dehydrogenase (NAD(+)) 40 369 IPR004434 GO:0006099
Trre15g02534 371 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 22 370 - -
Trre15g02534 371 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 31 370 - -
Trre15g02534 371 Pfam Isocitrate/isopropylmalate dehydrogenase 44 366 IPR024084 -
Trre15g02534 371 SMART Iso_dh_2 43 366 IPR024084 -
Trre15g02534 371 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 41 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02534 Trre-Chr15 21298073 21304724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02534 K00030 - gmx:100777867 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02534 15 21298073 21304724 Trre15g02534 15 21298073 21304724 ECH
Trre9g01354 9 11542906 11546418 Trre15g02534 15 21298073 21304724 PCT