Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01352 ATGGCAGGTGCTGTTATTTCTGCACTCAACACAAAACTAGACGCAACAACATTAGCACTTATATTGGAACAATTAGAGCATTGCAAAATCATATTTGTGGACTATGAATTTATTGACACTGCCCTCAAAGCAACAGAAATAATCTCCCAAAGAAAATCCAAGCCACCCCTTATTGTCCTAATACAAGACTATGACCAATTAGTGAAAGATATACCTCAAGGTACCTTAATCTACAATGAACTTCTTGAAAAGGGACAATCAGATTTTAACATTTCAATGCCAAGCAATGAATATGATCCTATATCAGTGAATTATACTTCAGGCTCAACAGGAATTCCAAAAGGAGCAGTTTATAGTCATAGAAGTGTTTATCTTAATTCACTCGCGATGATTACTCGTTTCGATGTCAATCCTATGCCGGTGTTTCTATGGACAGTTGACATGTTTAGATGCAATGGATGGTGTTTCATTTGGTCAATGCCTGCTCTTGGTGGCACAAACATTTTCCTAAGAAATAATTTTTCAGCAAAAGATATTCTTGATGCAATTCATGTTCATAAGGTAACACATTTGTGTGGTGCACCTACCCTTTTGGAAATTATTGCAAATTGTGGCATTATTAAGCCTTTTTCACACAAGGTTTGTGTCACAGTTGCTGGTATATTGCCATCATTCAAAATTATTAATAAGGTGGTAGAACTTGGATTTGATGTGAATATTGGTTATGGCATGACTGAAGCATTAGGTCCAGTTATTGTAAGAAAGTGGAAACCAAATTTTGATGATGATGTTACAAAGCTAAATTATTTTGAACAAAAAGGTGTTATAGAGTTTATGGTGGTAGAAGTTGACGTGAAAGATCCAAATTCAATGAAGAGTGTTCCCTATGATGGAAAAACCATAGGTGAAATTATGTTCAAAGGGAATACTTTAATGTTAGGGTATCTTAAGAGTTCACAAGTGAGTGATGAAGCTTTTAGGGATGGTTGGTATAGGACTAGGGACCTAGGTGTTAAGTTACCTAATGGTTCTTTTAATTTGAAAGATAGAGAAAAAGATATTATTTATTCTAAGGGTGAGTTTGTGAGTTCATTAGAGGTGGAAGCTGTTTTGTTGAATCATCCAATGGTTTTGAAAGCAGCTGTTGTGGGGAGATATGATGATGGGTCACCTTGTGCAATTGTGAAATTGAAAGATGGATATAGTGCCAATGTTGAAGATATTATCAAGTTTTGTGAAGATCAATTGGATGCTCATATGGTTCCTAAGAGTGTGGTGTTTGATGATTTGCCTCTTAATTCAACTGGGAAGGTACAGAAGTTTGTTATTAGAGAAAAGATTAAAAGCAATGGGTGGTGTGAGACAATTAATTAG 1374 0.3544 MAGAVISALNTKLDATTLALILEQLEHCKIIFVDYEFIDTALKATEIISQRKSKPPLIVLIQDYDQLVKDIPQGTLIYNELLEKGQSDFNISMPSNEYDPISVNYTSGSTGIPKGAVYSHRSVYLNSLAMITRFDVNPMPVFLWTVDMFRCNGWCFIWSMPALGGTNIFLRNNFSAKDILDAIHVHKVTHLCGAPTLLEIIANCGIIKPFSHKVCVTVAGILPSFKIINKVVELGFDVNIGYGMTEALGPVIVRKWKPNFDDDVTKLNYFEQKGVIEFMVVEVDVKDPNSMKSVPYDGKTIGEIMFKGNTLMLGYLKSSQVSDEAFRDGWYRTRDLGVKLPNGSFNLKDREKDIIYSKGEFVSSLEVEAVLLNHPMVLKAAVVGRYDDGSPCAIVKLKDGYSANVEDIIKFCEDQLDAHMVPKSVVFDDLPLNSTGKVQKFVIREKIKSNGWCETIN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01352 457 Pfam AMP-binding enzyme 1 356 IPR000873 -
Trre9g01352 457 SUPERFAMILY Acetyl-CoA synthetase-like 1 448 - -
Trre9g01352 457 Gene3D - 353 451 IPR045851 -
Trre9g01352 457 ProSitePatterns Putative AMP-binding domain signature. 103 114 IPR020845 -
Trre9g01352 457 Pfam AMP-binding enzyme C-terminal domain 366 437 IPR025110 -
Trre9g01352 457 Gene3D - 1 352 IPR042099 -
Trre9g01352 457 PANTHER ACYL-ACTIVATING ENZYME 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01352 Trre-Chr9 11539955 11541328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g01352 1 449 Miscellaneous Gene Families AT1G20560 46.421 2.95e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01352 - - aprc:113870314 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01352 9 11539955 11541328 Trre9g01352 9 11539955 11541328 ECH
Trre9g01352 9 11539955 11541328 Trre15g02535 15 21306595 21309411 PCT