Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02535 ATGAACAACATCTTCAAGATCATGCATTGGACTCGTTCTCTAACTCATTTCAGATCAACCAACATCTACTCATGCAAATTTTCAAACTTTTCTAACAACCTTGATAGAGGAACTTGGGAATCAATGGAGGGTCTACTTCATTGCTCTGCAAATTCTGTTCCTTTGTCTCCAATCAACTTCTTGGAGAGAGCAGCAAAGGTTTGTAATGACAGAACATCTGTTGTGTATGGTTCTTTGAAGTATAATTGGGGTCAAACTCATCAACGTTGTCTCAAACTTGCTTCTTCTCTTAACCAATTGGGGATTTCTCGTGGAGATGTGGTTGCCACCCTAGCACCTAATGTCCCTGCAATGTATGAGCTGCATTTTGCAGTACCAATGGCCGGAGCCATCCTTTGTACCCTTAATTCGCGTTTGGATGCAGCTATGGTTTCAGTACTGCTCGAGCATTCACAAGCAAAAATCCTTTTTGCTGACTACCAACTACTCGAAATTGCTCAAGGAGCATTGGACTTGCTTCGTGAAAGAGGAACAAAATTGCCGATTATTGTCTTAGTTACTGATTCCAATTCCTCATCTCCGATCCATATTTCACCAATCAATTACGAGTATGAGAAGCTAATGGAAGTTGGACATGATGATTTCAAAATTGTGAAACCGCAAAGTGAATGGGATCCTATAAGTATAAATTACACCTCAGGCACCACATCTAGGCCTAAAGGAGTTGTATACAGTCATAGAGGTGCTTATCTAAATTCTTTAGCAACAGTTCTACTCTTTCAAATGGACATCTTTCCTGTTTATCTTTGGAATGTTCCGTTGTTCCATTGCAACGGTTGGTGTCTCCCTTGGGGAGTCGCAGCTCAATTTGGCACAAATATTTGTTTAAGAAAAGTATCTCCAAAGAACATATTTGACAATATAATTCAACATAAGGTGACACACATGGCAGGAGCTCCTACTGTGCTCAACATGATTTTGAATTCTGCGTCGACTCATAGAAAGCCACTCAGCCACAAGGTTTTAGTTATGACAGGTGGTTCTCCTCCACCCCCGCAGATCCTTTCCAAGATGGAAGAAATTGGTTTTAGCGTTTCTCATCTCTATGGCTTGACAGAAACGTACGGTCCAGGGAGTTTTTGTGCTTGGAGACCTGAGTGGGATATGTTGCCTCCTGAAGAAAGATCAAAGCTGAAAGCTAGACAAGTGAAACATTCTGATGGGTACATAGAAGTTAAGGATAGGTTGAAGGACATAATAGTCTCTGGAGGAGAAAACATTAGCTCGGTCGAGGTAGAAACCGTTTTGTATAGCCATCCGGCTGTTCTCGAGGCTGCGGTTGTTGCCCGACCAGATGATCATTGGGGTCAAACTCCTTGCGCTTTTCTGAAATTGAAAGACGGGTTTGATGAAGATGCTCAAGAAATAATTGCATTTTGTAGGGAACATTTGCCGCATTACATGGCTCCTAAAACAATCATTTTTCTAGATATGCCGAAAACTTCTACAGGGAAGATACAAAAGTATATTCTAAGGGAGAAAGCAAAGGCTTTGGGAAGTATATCTATATCCAGCCCCATGAATTGTGAAAAAGTTGTTGATTGTTCAGTCTCAGGGAACCAACTGTGTCGCTGCCCCCTTTGA 1644 0.4155 MNNIFKIMHWTRSLTHFRSTNIYSCKFSNFSNNLDRGTWESMEGLLHCSANSVPLSPINFLERAAKVCNDRTSVVYGSLKYNWGQTHQRCLKLASSLNQLGISRGDVVATLAPNVPAMYELHFAVPMAGAILCTLNSRLDAAMVSVLLEHSQAKILFADYQLLEIAQGALDLLRERGTKLPIIVLVTDSNSSSPIHISPINYEYEKLMEVGHDDFKIVKPQSEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVLLFQMDIFPVYLWNVPLFHCNGWCLPWGVAAQFGTNICLRKVSPKNIFDNIIQHKVTHMAGAPTVLNMILNSASTHRKPLSHKVLVMTGGSPPPPQILSKMEEIGFSVSHLYGLTETYGPGSFCAWRPEWDMLPPEERSKLKARQVKHSDGYIEVKDRLKDIIVSGGENISSVEVETVLYSHPAVLEAAVVARPDDHWGQTPCAFLKLKDGFDEDAQEIIAFCREHLPHYMAPKTIIFLDMPKTSTGKIQKYILREKAKALGSISISSPMNCEKVVDCSVSGNQLCRCPL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02535 547 SUPERFAMILY Acetyl-CoA synthetase-like 42 518 - -
Trre15g02535 547 Gene3D - 416 519 IPR045851 -
Trre15g02535 547 Pfam AMP-binding enzyme 62 386 IPR000873 -
Trre15g02535 547 PANTHER ACYL-ACTIVATING ENZYME 43 403 - -
Trre15g02535 547 Gene3D - 45 413 IPR042099 -
Trre15g02535 547 ProSitePatterns Putative AMP-binding domain signature. 229 240 IPR020845 -
Trre15g02535 547 FunFam 2,3-dihydroxybenzoate-AMP ligase 417 519 - -
Trre15g02535 547 Pfam AMP-binding enzyme C-terminal domain 431 505 IPR025110 -
Trre15g02535 547 CDD ttLC_FACS_AEE21_like 53 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02535 Trre-Chr15 21306595 21309411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02535 403 522 Miscellaneous Gene Families AT1G20560 70.000 1.16e-54 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02535 - - cam:101512996 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02535 15 21306595 21309411 Trre15g02535 15 21306595 21309411 ECH
Trre9g01352 9 11539955 11541328 Trre15g02535 15 21306595 21309411 PCT