Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g01239 ATGATCTGTATTGACAATTCCGAATGGATGCGTAACGGAGATTATTCTCCTTCTCGATTTCAAGCTCAAGCTGACGCTGTTAATCTCATTTGCGGTGCAAAGACCCAGTCTAATCCGGAAAATACAGTGGGAGTTCTTATAATGGCGGGAAAGGGTGTTCGTGTTTTGGTCACCCCTACCAGTGATCTAGGCAAGATCTTAGCTTGCATGCATGGACTAGAAGTAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTTGCACAATTGGCTCTAAAGCATCGTCAAAATAAAAAGCAACAGCAAAGGATTATTGTCTTTGCTGGAAGTCCTGTCAAGCATGAAAAGAAAATGTTGGAGATGATAGGGAGAAAGTTGAAAAAGAACAGCGTAGCACTTGATATTGTTAATTTTGGTGAAGAAGACGAGGAGAAGACAGAGAAGCTGGAATCACTCCTTGCAGCTGTGAACAATAATGATACAAGCCATATTGTTCATGTTCCAGCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGTACACCAATTTTTACTGGTGACGGGGAAGGTGGAAGTGGCTTTGCTGCTGCTGCTGCAGCAGCTGCAGCTGGAGGTGTATCTGGATATGATTTTGGTGTGGATCCAAACTTGGATCCTGAATTGGCTCTTGCCTTGAGAGTTTCGATGGAAGAAGAAAGAGCCAGGCAGGAAGCAGCAGCAAAAAAGGCTGCAGAGGATGCTTCCAAACAAGAGAAAGGAGGTGAGCAGCAAGCCGGCTCACAAGAAGCCAGCTCACAAGATGCGACAATGACCGATCGTGCCGGTGCATCAACTTCTGAAGCAGAGAATAAGACAACTGATTTGATGGATGATGAGAATGCCCTACTGCAGCAGGCGCTTGCAATGTCAATGGATGAACCTGCGGTTGGCCACGATGTAAAAGATACAGATATGTCAGAAGCATCTATTGATGACCCTGAGCTGGCACTAGCTCTCCAATTGTCGGTAGCGGATAGTACAAAGGATCAAGCAAGCCAGTCAGAGGTGTTAGCAGATCAATCCGCTGTATCTGATATTCTCGCGTCGCTTCCTGGGGTCGACCTAAATGACCCTTCCATCAAAGATTTGCTGGCATCCATGCAAAATAAGTCTGAGCCGCAGCAGAAGAATGACGACAAGTCATCAAACGAGGAGAAGAAATAA 1203 0.4564 MICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLIMAGKGVRVLVTPTSDLGKILACMHGLEVGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEEKTEKLESLLAAVNNNDTSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQAGSQEASSQDATMTDRAGASTSEAENKTTDLMDDENALLQQALAMSMDEPAVGHDVKDTDMSEASIDDPELALALQLSVADSTKDQASQSEVLADQSAVSDILASLPGVDLNDPSIKDLLASMQNKSEPQQKNDDKSSNEEKK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g01239 400 MobiDBLite consensus disorder prediction 236 288 - -
Trre9g01239 400 Coils Coil 226 246 - -
Trre9g01239 400 Gene3D von Willebrand factor, type A domain 1 180 IPR036465 -
Trre9g01239 400 Gene3D - 214 305 - -
Trre9g01239 400 MobiDBLite consensus disorder prediction 364 400 - -
Trre9g01239 400 SUPERFAMILY vWA-like 1 169 IPR036465 -
Trre9g01239 400 CDD VWA_26S_proteasome_subunit 1 182 - -
Trre9g01239 400 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 391 IPR027040 GO:0006511|GO:0008540
Trre9g01239 400 ProSiteProfiles VWFA domain profile. 1 183 IPR002035 -
Trre9g01239 400 FunFam 26S proteasome non-ATPase regulatory subunit 4 1 180 - -
Trre9g01239 400 Pfam Ubiquitin interaction motif 324 338 IPR003903 -
Trre9g01239 400 Pfam Ubiquitin interaction motif 218 231 IPR003903 -
Trre9g01239 400 Pfam Ubiquitin interaction motif 291 306 IPR003903 -
Trre9g01239 400 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 216 235 IPR003903 -
Trre9g01239 400 SMART uim 291 310 IPR003903 -
Trre9g01239 400 SMART uim 323 342 IPR003903 -
Trre9g01239 400 SMART uim 216 235 IPR003903 -
Trre9g01239 400 MobiDBLite consensus disorder prediction 236 252 - -
Trre9g01239 400 SMART VWA_4 1 169 IPR002035 -
Trre9g01239 400 MobiDBLite consensus disorder prediction 386 400 - -
Trre9g01239 400 Pfam von Willebrand factor type A domain 1 109 IPR002035 -
Trre9g01239 400 FunFam 26S proteasome regulatory subunit N10 214 305 - -
Trre9g01239 400 MobiDBLite consensus disorder prediction 253 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g01239 Trre-Chr9 10498786 10503728 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g01239 K03029 - gmx:100814594 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01239 9 10498786 10503728 Trre9g01239 9 10498786 10503728 ECH
Trre9g01239 9 10498786 10503728 Trre15g02640 15 22248318 22254054 PCT