Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02640 ATGATCTGTGTTGATAATTCTGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCCCAATCAGACGCTGTAAGTTTGATTTGCGGTGCTAAAACTCAGTCTAATCCGGAAAATACCGTTGGAGTTCTCACTATGGCGGGGAAGGGTGTTCGGGTTTTGGCTACCCCTACCAGTGATTTGGGCAAAATTTTAGCTTGTATGCATGGTCTAGAAATAGGTGGTGAGATGAACCTTGCTGCTGGCATTCAGGTCGCACAGTTGGCTCTTAAGCATCGGCAGAATAAGAAGCAGCATCAAAGGATTATTGTCTTTTCTGGAAGTCCTATCAAGCATGAAAAGAAAATGTTGGAGATGATTGGGAAAAAGTTGAAAAAGAATAGTGTTGCACTTGACATTGTCAATTTCGGTGAAGAAGACGAGGGGAAGACAGAGAAGCTGGAAGCACTCCTTGCAGCCGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCTGGTCCAAATGCTCTTTCAGATGTACTTATAAGTACACCTATATTTACTGGTGACGGAGAAGGTGGAAGTGGTTTTGCAGCTGCTGCTGCAGCAGCATCTGCAGGCGGTGTATCTGGATATGATTTTGGTGTGGATCCAAACTTGGACCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGAGCCAGGCAGGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAGGAGAAAGGTGGTGAGCAGCAAGCTATTTCCCAGGATGCAACTATGACTGAGCGAACCAGTACAGAAGCTGAGACAAATGATATGATGGATGATGAGAATGCTCTGCTACAACAGGCCCTTGCAATGTCAATGGATGATGCTGTAGTTAACCATGATGTAAGAGACGCAGATATGTCTGAAGCTGCTACAGATGATGTTGACTTGGCTCGAGCTCTCCAATTGTCCCAAACCCCCGCAAGCCTTGCTGCGGACCCAGTGGGGAAATTGTTGGCGGATCAGTCCTTTGTATCTTCTGTCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAGGATTTATTGGCTTCCATGCAAAATCAGTCTGAGTCTCACAAGAAGAATGAAGAGGACCGACCAAATGAGGAGTCAGATTGA 1173 0.4587 MICVDNSEWMRNGDYSPSRFQAQSDAVSLICGAKTQSNPENTVGVLTMAGKGVRVLATPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQHQRIIVFSGSPIKHEKKMLEMIGKKLKKNSVALDIVNFGEEDEGKTEKLEALLAAVNNNDSSHMVHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQAISQDATMTERTSTEAETNDMMDDENALLQQALAMSMDDAVVNHDVRDADMSEAATDDVDLARALQLSQTPASLAADPVGKLLADQSFVSSVLASLPGVDPNDPSVKDLLASMQNQSESHKKNEEDRPNEESD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02640 390 SUPERFAMILY vWA-like 1 169 IPR036465 -
Trre15g02640 390 Pfam von Willebrand factor type A domain 1 109 IPR002035 -
Trre15g02640 390 Pfam Ubiquitin interaction motif 218 231 IPR003903 -
Trre15g02640 390 Pfam Ubiquitin interaction motif 313 326 IPR003903 -
Trre15g02640 390 Pfam Ubiquitin interaction motif 281 296 IPR003903 -
Trre15g02640 390 Gene3D von Willebrand factor, type A domain 1 180 IPR036465 -
Trre15g02640 390 Coils Coil 226 246 - -
Trre15g02640 390 SMART VWA_4 1 169 IPR002035 -
Trre15g02640 390 SMART uim 281 300 IPR003903 -
Trre15g02640 390 SMART uim 313 332 IPR003903 -
Trre15g02640 390 SMART uim 216 235 IPR003903 -
Trre15g02640 390 FunFam 26S proteasome non-ATPase regulatory subunit 4 1 180 - -
Trre15g02640 390 CDD VWA_26S_proteasome_subunit 1 182 - -
Trre15g02640 390 MobiDBLite consensus disorder prediction 236 279 - -
Trre15g02640 390 FunFam 26S proteasome regulatory subunit N10 214 295 - -
Trre15g02640 390 MobiDBLite consensus disorder prediction 253 272 - -
Trre15g02640 390 ProSiteProfiles VWFA domain profile. 1 183 IPR002035 -
Trre15g02640 390 Gene3D - 214 299 - -
Trre15g02640 390 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 216 235 IPR003903 -
Trre15g02640 390 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 379 IPR027040 GO:0006511|GO:0008540
Trre15g02640 390 MobiDBLite consensus disorder prediction 236 252 - -
Trre15g02640 390 MobiDBLite consensus disorder prediction 375 390 - -
Trre15g02640 390 CDD PSMD4_RAZUL 332 378 - -
Trre15g02640 390 MobiDBLite consensus disorder prediction 351 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02640 Trre-Chr15 22248318 22254054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02640 K03029 - gmx:100814594 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02640 15 22248318 22254054 Trre15g02640 15 22248318 22254054 ECH
Trre9g01239 9 10498786 10503728 Trre15g02640 15 22248318 22254054 PCT