Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00987 ATGAGTTCTATGAATATTGGTACATTGGTTAGTCCCAATTCTAAGTGGAACCAAACAATCACAACTAAAAACCAAACTCTTGTTCCCTTTCTAGCTATTCCCATTTCATCACTTACCAATCAACAAAGAAGAAAAAATTTGGTTTCTTCTTTTTCCTCTTTCAAACTCTATGCAGTTCTAACTAATGTAGCCAAAGTAAAAGACAAAAAAACCAATGAAGAAACCATACCCAATTTCAATTTCAATGCATACATGGTTGAAAAAGCTAATACACTGAACAAAGCATTGGATGAAGCAATTGTACTAAAAGAACCGGAGAAGATTCACGAAGCTATGCGATATTCCCTCCTGGCAGGTGGAAAAAGAGTCCGTCCGATACTTTGTATTGCCGCCTGCGAACTCGTAGGCGGCAAAGAAGAAACAGCGATCCCATCGGCCTGTGCCGTGGAAATGATTCATACTATGTCCTTGATCCATGACGATTTACCGTGCATGGACAACGACGATCTACGTAGAGGAAAGCCAACAAACCACAAAGTCTATGGCGAGGACGTAGCTGTCCTTGCTGGGGACGCACTACTTTCATTTGCGTTTGAACACGTGGCCGTTTCAACCGCAGGGGTCCCACCTGAAAAAGTAGTCAAAGCAATTGCTGAGCTGGCAAAATCAGTTGGAAAAGAAGGACTTGTTGCGGGACAAATTGTTGATTTAGAATCAGAAGGGCTATCAAATGTCGGATTAAAGACGCTCGAGTTTATACATCTTCGAAAAACCGCGGCTTTGTTGGAAGCTTCAGTTGTTATGGGAGCAATAATTGGTGGTGGTTGTGAAGATGAAATTGAAAAATTAAGAAAATTTGCTAGGTGTATTGGATTATTGTTCCAAGTTGTTGATGATATTCTTGATGTTACTAAATCTTCTGAGGAATTAGGGAAAACAGCAGGGAAAGATTTGATTGCTGATAAGGTTACTTATCCTAAGCTTTTGGGATTGGAAAAATCTAAGGAGTTTGCTGAAAAATTGATTAAGGATGCACATGATTGTCTTGTTGGTTTTGATTATGAAAAGGTTGCTCCTTTACTTGCTTTAAGCAATTACATTGCTTATAGGCAAAATTAG 1119 0.3932 MSSMNIGTLVSPNSKWNQTITTKNQTLVPFLAIPISSLTNQQRRKNLVSSFSSFKLYAVLTNVAKVKDKKTNEETIPNFNFNAYMVEKANTLNKALDEAIVLKEPEKIHEAMRYSLLAGGKRVRPILCIAACELVGGKEETAIPSACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHVAVSTAGVPPEKVVKAIAELAKSVGKEGLVAGQIVDLESEGLSNVGLKTLEFIHLRKTAALLEASVVMGAIIGGGCEDEIEKLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKVTYPKLLGLEKSKEFAEKLIKDAHDCLVGFDYEKVAPLLALSNYIAYRQN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00987 372 SUPERFAMILY Terpenoid synthases 82 349 IPR008949 -
Trre9g00987 372 ProSitePatterns Polyprenyl synthases signature 2. 290 302 IPR033749 -
Trre9g00987 372 Pfam Polyprenyl synthetase 106 343 IPR000092 GO:0008299
Trre9g00987 372 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 43 372 - -
Trre9g00987 372 ProSitePatterns Polyprenyl synthases signature 1. 157 173 IPR033749 -
Trre9g00987 372 Gene3D Farnesyl Diphosphate Synthase 78 372 IPR008949 -
Trre9g00987 372 SFLD Isoprenoid Synthase Type I 83 370 - -
Trre9g00987 372 FunFam Geranylgeranyl diphosphate synthase 78 372 - -
Trre9g00987 372 SFLD Polyprenyl Transferase Like 83 370 - -
Trre9g00987 372 CDD Trans_IPPS_HT 104 370 IPR000092 GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00987 Trre-Chr9 7698531 7699649 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00987 K13789 - gmx:100778289 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00987 9 7698531 7699649 Trre9g00987 9 7698531 7699649 ECH
Trre15g04017 15 50629408 50630974 Trre9g00987 9 7698531 7699649 ECH
Trre9g00987 9 7698531 7699649 Trre15g04017 15 50629408 50630974 PCT