Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04017 ATGATTGAAAGAGCAACTAGGGTTAACAAAGCCCTAGACGACGCCGTTTCATTACGCGAACCGTTAAAAGTTCACGAAGCTATGCGATACTCTCTCCTCGCCGGCGGAAAACGCGTCCGCCCCGTTCTCTGTTTAGCCGCCTGCGAACTCGTCGGCGGAACTGAATCCATGGCGATGCCGGCCGCCTGTGCCGTTGAAATGATTCACACCATGTCGTTAATCCACGACGATCTTCCTTGTATGGATAACGACGATCTCCGACGAGGTAAACCGACGAATCACAAAGTATTCGGTGAAGACGTTGCGGTTCTCGCCGGAGATGCTTTACTCGCTTTCGCCTTTGAGCATATCGCGGTATCGACAAAAGGAGTTTCTACGGCGAGAATTGTCCGTGCAATCGGAGAATTAGCAAAATCGATCGGCTCCGAAAAAGGTGCTGTTGTTCTTGGTGCAATTCTTGGTGGTGGTTGTGATGAAGATGTTGAAAAATTGAGAAAATTTGCTAGATATATAGGTTTATTGTTTCAGGTTGTTGATGATATTCTCGATGTTACAAAATCTTCACAGGAATTAGGTAAAACTGCTGGGAAAGATTTGGTAGCTGATAAAGTTACTTATCCAAAGCTTTTGGGGATTGAAAAATCTAAAGAATTTGCTCAGAAATTGAACAGTGATGCACAAGATCAGCTTTCTGGTTAA 699 0.4492 MIERATRVNKALDDAVSLREPLKVHEAMRYSLLAGGKRVRPVLCLAACELVGGTESMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTKGVSTARIVRAIGELAKSIGSEKGAVVLGAILGGGCDEDVEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAQKLNSDAQDQLSG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04017 232 SUPERFAMILY Terpenoid synthases 3 230 IPR008949 -
Trre15g04017 232 CDD Trans_IPPS_HT 24 230 IPR000092 GO:0008299
Trre15g04017 232 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 143 - -
Trre15g04017 232 ProSitePatterns Polyprenyl synthases signature 2. 171 183 IPR033749 -
Trre15g04017 232 ProSitePatterns Polyprenyl synthases signature 1. 73 89 IPR033749 -
Trre15g04017 232 Gene3D Farnesyl Diphosphate Synthase 2 144 IPR008949 -
Trre15g04017 232 Pfam Polyprenyl synthetase 24 121 IPR000092 GO:0008299
Trre15g04017 232 Pfam Polyprenyl synthetase 146 222 IPR000092 GO:0008299
Trre15g04017 232 Gene3D Farnesyl Diphosphate Synthase 145 232 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04017 Trre-Chr15 50629408 50630974 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04017 K13789 - zju:107424859 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04017 15 50629408 50630974 Trre15g04017 15 50629408 50630974 ECH
Trre15g04017 15 50629408 50630974 Trre9g00987 9 7698531 7699649 ECH
Trre9g00987 9 7698531 7699649 Trre15g04017 15 50629408 50630974 PCT