Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00980 ATGGTAACATTAAAATCCATCCTCTTCACCATTTCTCATTTCTTATTCTTATTTCCGTTCTCAACTAATCATATCACTTGCACCACCGTCACCACCACCACCACCACCACCACCACTCAACGCTTCAAACAAGCACCAAAATTCTACAACTCACCAAACTGCCCCACCATAACCTCCCTCACATGCTCCGACGAAGCAGTCCATGTAGCAATGACACTAGACATCAAATACCTCCGTGGCTCCATGGCTGCAATTCTCTCCGTTCTCCAACACTCTTCCTGTCCAGAAAACACCTTCTTCCACTTCGTAACCGCCGCATCAAAAACAACCTCCACCGTCATTCTCAACACTACACTCACTAACTCATTTCCTTATCTTAAATTCCAAATCTACCCTTTCCACGACGACGTCGTTTTAGGTTTAATCTCAACTTCAATCCGTTCCGCACTCGATTGTCCTCTCAACTACGCGCGAAATTACATGTCTAACCTTCTTCCAAATTGCGTTCGCAAGATCGTTTACCTTGATTCCGATCTAATACTCGTCGATGACATTGCGAAACTAGCGGCAACGAATCTCGGAAACGACGCCGTTTTAGCTGCGCCGGAGTATTGCAACGCGAATTTCAGCAACTATTTTACACCTACGTTTTGGTCGAATCCGTCGTTATCGTTAACGTTTGCGAGTCGGAAGGCTTGTTATTTTAACACCGGAGTTATGGTGATTGATTTGGAGCGGTGGAGGATCGGAGATTATACGACGAAGATTACTGAATGGATGGAGCTTCAGAAGAGAATGAGGATCTATGAGCTTGGTTCTTTGCCGCCGTTTTTGCTTGTTTTCGCCGGAAAAATTGTTCCGGTTGATCATCGGTGGAATCAGCATGGGCTTGGCGGTGATAATTTTCGTGGGCTTTGTAGAGACTTACATCCGGGCCCGGTGAGTTTACTGCATTGGAGTGGGAAAGGTAAACCGTGGGCCAGGCTTGATGCTAACCGTCCTTGCCCATTGGATACTTTGTGGGCCCCATATGACCTTCTTGAAACACCATTTGCTCTTGAGGCCTAA 1068 0.4625 MVTLKSILFTISHFLFLFPFSTNHITCTTVTTTTTTTTTQRFKQAPKFYNSPNCPTITSLTCSDEAVHVAMTLDIKYLRGSMAAILSVLQHSSCPENTFFHFVTAASKTTSTVILNTTLTNSFPYLKFQIYPFHDDVVLGLISTSIRSALDCPLNYARNYMSNLLPNCVRKIVYLDSDLILVDDIAKLAATNLGNDAVLAAPEYCNANFSNYFTPTFWSNPSLSLTFASRKACYFNTGVMVIDLERWRIGDYTTKITEWMELQKRMRIYELGSLPPFLLVFAGKIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDTLWAPYDLLETPFALEA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00980 355 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 17 348 - -
Trre9g00980 355 Pfam Glycosyl transferase family 8 68 328 IPR002495 GO:0016757
Trre9g00980 355 SUPERFAMILY Nucleotide-diphospho-sugar transferases 67 346 IPR029044 -
Trre9g00980 355 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 68 335 IPR029044 -
Trre9g00980 355 FunFam Hexosyltransferase 68 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00980 Trre-Chr9 7634402 7635469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00980 34 355 Glycosyltransferase AT1G19300 73.273 1.60e-176 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00980 K20893 - gmx:100783054 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00980 9 7634402 7635469 Trre9g00980 9 7634402 7635469 ECH
Trre15g04005 15 50436446 50437477 Trre9g00980 9 7634402 7635469 ECH
Trre9g00980 9 7634402 7635469 Trre15g04005 15 50436446 50437477 PCT