Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04005 ATGAAATTCACGACATTAATCACATTATGTATCCTCCTTCACTTCTCCAAACACACCTTAAGCACCACCATCACCACCACCCTTGAAGAAAACTTCAAAGAAGCACCAAAATTCTACAACTCCCCAACCTGCACAACAATTACAAACCACACATGTTCAATCGAAGCCGTACACGTGGCAATGACACTCGACGTGTCATACATCCGTGGCTCCATGGCAGCAATTCTCTCCATCCTCCAACATTCCTCATGTCCCGAAAACATTATTTTCCATTTCATCACTTCCTCTTCAAAACCTTCAACCGTTCTCAACAGAATTATAACTAACTCTTTTCCTTATCTGAAATACCAAATATACCCTTTCAACGACGCACCCGTCGCCGGATTAATCTCCACCTCCATCCGCTCCGCCCTGGATTGTCCGCTCAACTACGCCCGCACCTATCTCGCCGATATCCTCCCTATTTGTATCTCTAAAGTCGTTTATCTTGACTCTGATTTAATCCTCGTCGACGACATTGCAAAACTCGCCGCTACTCCTCTCCGTTCAAACACCGTCCTCGCCGCGCCGGAATATTGTAAAGCGAATTTCAGTATTTATTTTACTCCTTCGTTTTGGTCGAATCCTTCACTTTCACTTACGTTCGCGAATCGTGAGGCTTGTTACTTTAATACTGGAGTTATGGTTATTGATCTTCAACGGTGGCGTTCCGGTGATTATACGACGATGATTCGGGAGTGGATGGAGTTGCAGAAGAGAATGCGGATCTATGAATTGGGATCGTTGCCGCCGTTTTTGTTGGTTTTTGCTGGGAGGATTACGCCGGTGGATCATCGGTGGAATCAGCATGGGCTTGGTGGTGATAATTTTCGTGGGCTTTGTAGGGATTTACATCCGGGCCCGGTTAGTTTGTTGCATTGGAGTGGAAAGGGAAAACCGTGGGCCAGGCTTGATGGGAATAACGCTTGTCCTTTGGATGCTTTGTGGGCTCCATATGATCTTCTCAAGACTCATTCTGCTATTGAGGTGTAG 1032 0.4593 MKFTTLITLCILLHFSKHTLSTTITTTLEENFKEAPKFYNSPTCTTITNHTCSIEAVHVAMTLDVSYIRGSMAAILSILQHSSCPENIIFHFITSSSKPSTVLNRIITNSFPYLKYQIYPFNDAPVAGLISTSIRSALDCPLNYARTYLADILPICISKVVYLDSDLILVDDIAKLAATPLRSNTVLAAPEYCKANFSIYFTPSFWSNPSLSLTFANREACYFNTGVMVIDLQRWRSGDYTTMIREWMELQKRMRIYELGSLPPFLLVFAGRITPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDGNNACPLDALWAPYDLLKTHSAIEV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04005 343 Pfam Glycosyl transferase family 8 58 316 IPR002495 GO:0016757
Trre15g04005 343 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 9 337 - -
Trre15g04005 343 FunFam Hexosyltransferase 58 323 - -
Trre15g04005 343 SUPERFAMILY Nucleotide-diphospho-sugar transferases 57 336 IPR029044 -
Trre15g04005 343 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 58 324 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04005 Trre-Chr15 50436446 50437477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04005 23 337 Glycosyltransferase AT3G50760 72.274 1.03e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04005 K20893 - gmx:100783054 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04005 15 50436446 50437477 Trre15g04005 15 50436446 50437477 ECH
Trre15g04005 15 50436446 50437477 Trre9g00980 9 7634402 7635469 ECH
Trre9g00980 9 7634402 7635469 Trre15g04005 15 50436446 50437477 PCT