Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00596 ATGTACAGAGAGCGAGGAAGCGTTGGATCCAAAGCCGAGGTTGCTTCCGTTGATCGGAAACGAATCAACGACGTCCTTGACAAACAACTCGAAAGATCTTCACCGTCCACTTCAAGAACCATCAACGGTAAAGATAGGTCCTCCTCTTCCTCTCTCTTAACCGCCAAGGATCATAGGGACCCTCGCTCCGCCTCCATCACTCTTCCTAAAAACGCTTCCGATGAGGAATCTGAAACGGACAGTGAAGAGTCTGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCGTGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGTGAGGTTGACGATGATTACATCCAAGACGATTTCAATCTGTGTGGATTGAGCAGTCAAGTGCCGTATTATGATTATGCGCTAGATTTGATTTTGGATGTTGAGTCCTCCCATGGTGACATGTTTACCGAGGAACAAAATGAGTTAATTGAATCGGCAGCGGAGATGCTTTATGGTATGATTCATGCCCGGTATATATTGACCAGCAAAGGAATGGCTGCCATGTTGGACAAGTACAAGAACTATGACTTTGGCAGATGCCCAAGAGTTTACTGCTCCGGACAACCCTGCCTTCCAGTTGGTCAGTCCGACATTCCTAGGTCCAGCACTGTGAAGATATATTGCCCGAGGTGTGAAGACGTTTACTATCCTCGTTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGTACCACATTTCCTCACCTGTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGAACTATGTTCCGAGAGTTTTTGGATTCAAACTTCACAAGCCATGA 849 0.4523 MYRERGSVGSKAEVASVDRKRINDVLDKQLERSSPSTSRTINGKDRSSSSSLLTAKDHRDPRSASITLPKNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQNYVPRVFGFKLHKP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00596 282 SMART CK_II_beta_2 95 278 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 SUPERFAMILY Casein kinase II beta subunit 93 281 IPR035991 GO:0005956|GO:0019887
Trre9g00596 282 Gene3D - 193 267 - -
Trre9g00596 282 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 88 192 IPR016149 GO:0005956|GO:0019887
Trre9g00596 282 MobiDBLite consensus disorder prediction 29 50 - -
Trre9g00596 282 Pfam Casein kinase II regulatory subunit 95 278 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 FunFam Casein kinase II subunit beta 193 267 - -
Trre9g00596 282 PRINTS Casein kinase II regulatory subunit family signature 95 111 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 PRINTS Casein kinase II regulatory subunit family signature 167 188 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 PRINTS Casein kinase II regulatory subunit family signature 192 213 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 PRINTS Casein kinase II regulatory subunit family signature 214 235 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 PRINTS Casein kinase II regulatory subunit family signature 112 126 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 PRINTS Casein kinase II regulatory subunit family signature 242 259 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 MobiDBLite consensus disorder prediction 1 91 - -
Trre9g00596 282 ProSitePatterns Casein kinase II regulatory subunit signature. 196 227 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 MobiDBLite consensus disorder prediction 14 28 - -
Trre9g00596 282 PANTHER CASEIN KINASE II SUBUNIT BETA 74 281 IPR000704 GO:0005956|GO:0019887
Trre9g00596 282 FunFam Casein kinase II subunit beta 88 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00596 Trre-Chr9 4256366 4259851 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00596 K03115 - gmx:100799304 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00596 9 4256366 4259851 Trre9g00596 9 4256366 4259851 ECH
Trre9g00596 9 4256366 4259851 Trre15g03456 15 41074928 41077723 PCT