Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03456 ATGTACAAAGAAAGAGGCGTTCCTGCTTCCAAATCGGAGGATCGGAAACGAATCAACGATGTTCTCGATAAGCAACTCGAACGATCTTCTCCTTCAACTTCTCGTCCCATCAATGGAAAACATGTCAAAGAAAGAGAAACTACCAATAACAACATCAAGGATCCTCGTTCTGCTTCCGCTTCCAAAACTTCCAATATCTCTGAGGAATCTGAAACAGATAGTGAAGAATCGGATGTGAGTGGTTCTGATGGAGAAGACACATCTTGGATCTCATGGTTCTGCAATCTCAGAGGAAATGAGTTCTTTTGCGAGGTTGATGATGATTACATTCAAGATGACTTCAACCTTTGTGGATTAAGCAGCCAAGTTCCTTACTATGATTATGCTCTTGATTTGATTTTGGATGTTGAATCCTCTCATGAGGAACAAAACGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTATGATTCATGCACGATACATACTGACAAGCAAAGGAATGGCTGCCATGCTTGACAAGTACAAGAACTATGATTTTGGCAGATGTCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGCCAGTCGGACATTCCTAGGTCAAGTACTGTGAAAATATATTGTCCTAGGTGTGAGGATCTTTATTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCACACCTCTTCTTGATGACATATGGACAACTGAAGCCGCAGAAACCATCTCAGGGCTATGTTCCAAGAGTTTTTGGCTTCAAACTTCACAAGCCATGA 813 0.4182 MYKERGVPASKSEDRKRINDVLDKQLERSSPSTSRPINGKHVKERETTNNNIKDPRSASASKTSNISEESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHEEQNELIESAAEMLYGMIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKLHKP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03456 270 MobiDBLite consensus disorder prediction 1 84 - -
Trre15g03456 270 FunFam Casein kinase II subunit beta 81 180 - -
Trre15g03456 270 Pfam Casein kinase II regulatory subunit 88 266 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 MobiDBLite consensus disorder prediction 52 67 - -
Trre15g03456 270 Gene3D - 181 255 - -
Trre15g03456 270 SMART CK_II_beta_2 88 266 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 SUPERFAMILY Casein kinase II beta subunit 86 269 IPR035991 GO:0005956|GO:0019887
Trre15g03456 270 MobiDBLite consensus disorder prediction 1 24 - -
Trre15g03456 270 FunFam Casein kinase II subunit beta 181 255 - -
Trre15g03456 270 PANTHER CASEIN KINASE II SUBUNIT BETA 67 269 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 PRINTS Casein kinase II regulatory subunit family signature 88 104 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 PRINTS Casein kinase II regulatory subunit family signature 155 176 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 PRINTS Casein kinase II regulatory subunit family signature 180 201 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 PRINTS Casein kinase II regulatory subunit family signature 105 119 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 PRINTS Casein kinase II regulatory subunit family signature 230 247 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 ProSitePatterns Casein kinase II regulatory subunit signature. 184 215 IPR000704 GO:0005956|GO:0019887
Trre15g03456 270 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 81 180 IPR016149 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03456 Trre-Chr15 41074928 41077723 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03456 K03115 - gmx:100780095 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03456 15 41074928 41077723 Trre15g03456 15 41074928 41077723 ECH
Trre9g00596 9 4256366 4259851 Trre15g03456 15 41074928 41077723 PCT