Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00358 ATGGTTAATCGACGCTTCACTCAGGTAGCCACCAGCGACGACGATGAAGAAGAAGCACCACCACCTCAGCGGAATTCCAAGCTACGCAAACGGAAGAGAATGAAGCTTCTAGACGACGAAGAAGAAGACAACGGTAGCGATAATAACAATCACAATAAAAATAACGATAGCGATAGCGACGATGATAGTGAGAAGGAAGAAGGGAAAAAGGAACCGCCTCAGACTCCAGATGATGCAAAACCAATTGGTGATCCAATTAGGGTTTCGGGAAAAGGAAGAGGGAGGAAGAGACATTACGAATCATTCGAATTCGATGGCAATCAATATTCTCTCGAGGATCCTGTAATGCTTGTGCCTGAGGATAAAGAACAAAAACCCTACGTTGCTATAATCAAGGATATTATACAATACTGTAGTGGTAGCATAATGGTGGCGGGGCAGTGGTTTTATCGTCCTGAAGAAGCTGAAAAAAAAGGCGGTGGAAGCTGGAAGTCGTGTGATACAAGGGAGCTTTTTTATAGTTTCCACCGAGATGAGGTTCCTGCAGAGTCGGTTATGCATAAGTGTGTGGTGCACTTTGTTCCCTTGAACAAACAGTTTCCGAAACGTAAGCAACATCCTGGCTTTATTGTACAAAAGGTGTATGACACTTTGGAAAGGAAACTCTGGAAGCTGACTGATAAGGACTTTGAGGATGTTAAACAGCAAGAAATTGACGAGCTTGTTCAGAAAACCCGGAAACGCATCGGTGAGCTACTCGACATTGAGCCTGAAGATGCCCCTCCTGCTGATCAGGAGGAGGTGACGAAAAATAAAAGAAGCTTGAGGAGAAAGAGCATTTCTCCCATTGATGTTTCAAGGGAGGAGGAAGGAATTCCTAAATCTGACCAACATTCAAAGCCTGAAACACCAGGGAGTGTAAATAATGACTCAAAGTATCATCGCATATTAGTGAAGTTCAATTCGCTAACTGGTAACATTCATCGCGACAAATGGTTGGAGAGGCTGCTTCAACACATTCAGTACATGTGTAATTATGACGAGAGTATAGAAAAGGGAAAGGGGTCAGGAAATGCCGATTCTGATGAAATCAAGAATAAAAACAATGATGGAACTTCAGAAAAAGCAAATGACTGTCCGGAGGACAAGGGGCAGAAGAGTTCCGAGTCCTTTGTGTGGCCAGATGCTGCTGTTTCAGCCATAGTTTCTCTTGAAAAGGCTTCACATGAGGCTCTATCAACAGATTTTCAGAAGTATAACCAAAAGTTGCGGCAACTAGATTTTAATCTCAAGAACAATGCCTTGCTAGCACGTCGTCTGTTAAATGGAGAGTTGAAACCTTCAAAAATGTTGAATATGACACCCATTGAATTAAAGGAGGGCTTGACTGCTGAGGAAATAACCAAGAAGGAGCCTGATGAAAAACAGCACATGCAAATGACAGATGCCCGCTGCTCAAGATGCACGGAATTTAAGGTGGGTTTAAGGGAGATTATCCACGCTGGACACGGTGACCGTTATCAGCTGGAATGTGTTGCCTGTGGTAATTCCTGGTATGCCTCCCGGGATGAGGTGTCTGCACTGACCATAGACGCATCGGATTCAAAGCGAAGCATAGGCACAGCGCCATTGGCCACTGCAAAATTTGAAGATGTTCAGAAGAAGCTGGCTAGTCCCCGTGAATCTGAAAACTCAGCTGCTGATGACATATCTAAGAAAACAGGTGAACCATGTGTGCCTGTTTTGGACACCCAGAAATCATTCGGCAAACCCAAGAAAGATGACAATATCGAGGCCAAAAGACATGCTGATAAGGAATGA 1821 0.4399 MVNRRFTQVATSDDDEEEAPPPQRNSKLRKRKRMKLLDDEEEDNGSDNNNHNKNNDSDSDDDSEKEEGKKEPPQTPDDAKPIGDPIRVSGKGRGRKRHYESFEFDGNQYSLEDPVMLVPEDKEQKPYVAIIKDIIQYCSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPKRKQHPGFIVQKVYDTLERKLWKLTDKDFEDVKQQEIDELVQKTRKRIGELLDIEPEDAPPADQEEVTKNKRSLRRKSISPIDVSREEEGIPKSDQHSKPETPGSVNNDSKYHRILVKFNSLTGNIHRDKWLERLLQHIQYMCNYDESIEKGKGSGNADSDEIKNKNNDGTSEKANDCPEDKGQKSSESFVWPDAAVSAIVSLEKASHEALSTDFQKYNQKLRQLDFNLKNNALLARRLLNGELKPSKMLNMTPIELKEGLTAEEITKKEPDEKQHMQMTDARCSRCTEFKVGLREIIHAGHGDRYQLECVACGNSWYASRDEVSALTIDASDSKRSIGTAPLATAKFEDVQKKLASPRESENSAADDISKKTGEPCVPVLDTQKSFGKPKKDDNIEAKRHADKE 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00358 606 MobiDBLite consensus disorder prediction 553 570 - -
Trre9g00358 606 MobiDBLite consensus disorder prediction 32 77 - -
Trre9g00358 606 MobiDBLite consensus disorder prediction 263 297 - -
Trre9g00358 606 MobiDBLite consensus disorder prediction 9 25 - -
Trre9g00358 606 MobiDBLite consensus disorder prediction 353 385 - -
Trre9g00358 606 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 599 - -
Trre9g00358 606 MobiDBLite consensus disorder prediction 587 606 - -
Trre9g00358 606 Pfam Transcription factor S-II (TFIIS), central domain 324 476 IPR003618 GO:0006351
Trre9g00358 606 ProSiteProfiles TFIIS central domain profile. 328 486 IPR003618 GO:0006351
Trre9g00358 606 MobiDBLite consensus disorder prediction 255 310 - -
Trre9g00358 606 MobiDBLite consensus disorder prediction 352 390 - -
Trre9g00358 606 CDD BAH_plant_3 89 235 - -
Trre9g00358 606 Gene3D - 357 460 IPR036575 GO:0006351
Trre9g00358 606 SMART mid_6 362 468 IPR003618 GO:0006351
Trre9g00358 606 ProSiteProfiles BAH domain profile. 107 226 IPR001025 GO:0003682
Trre9g00358 606 SMART BAH_4 107 226 IPR001025 GO:0003682
Trre9g00358 606 Pfam BAH domain 108 224 IPR001025 GO:0003682
Trre9g00358 606 Gene3D - 5 211 IPR043151 -
Trre9g00358 606 MobiDBLite consensus disorder prediction 553 606 - -
Trre9g00358 606 SUPERFAMILY Elongation factor TFIIS domain 2 323 459 IPR036575 GO:0006351
Trre9g00358 606 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00358 Trre-Chr9 2558763 2562676 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00358 - - cam:101495294 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00358 9 2558763 2562676 Trre7g05436 7 60297770 60302843 PCT