Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05436 ATGGTTACTCGACGGTTCATATCAACCAGCGACGATGAAGACGATTCACCACCACCACCACCACCTCCTTCCAACAACCACCGCAAAAGGAAGCTTCACGAAGAGAGTCATGATGATGATGATGACGACGACGATGATGAGAAGGAGGAAGAGGATCCTTCTAGCGAAGAAGATGAAGATGATTCGCCAGTGGAAGATGCTAAACCCATTGGTGAACCAGTTAGGGTTTCTGGAAAAGGAAAAGGCAGAAAAAAGCATTTTCACTCATTTGAATTCGACGGTGATCAATACAACTTGGAGGACCCTGTGCTTCTTGTGCCTGAAGTTAAAGATCAAAAGCCGTATGTTGCAATTATCAAGGACATTACACAAAATATAGAAGGAAGCTTGATGATCACAGGGCAGTGGTTTTACCGTCCAGATGAAGCAGAAAAAAAGGGTGGTGGTAGCTGGCAATCAAATGACACCAGAGAGCTGTTTTATAGTTTCCACCGTGACGACGTTCCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGATTCCAACTCGTAAGCAGTATCCTGGGTTTATTGTGCAGAAGGTGTATGACACAGATGAAATGAAATTATGGAAACTAACTGATAAGGACTATGAGGACGGTAATCAACAAGAAATTGATGAGCTTGTTCAGAAAACTCTTCAACGTTTGGGTGACCTACCTGACATTGAGACTGATGAAGCTCCCACTGATCATGAAGATCTGATGAGAAGTAAAAGAATCTTGAAGAAAAAGAGCATTTCACATCTTGATGTTTCAAGGGAGGACGAAACATCTCGAAAGAGTTTCCAACATCTGAAACCTGAAACACCAGGGAGTACCTCAGAGCATTATCGCATATTAGTGAAATTTAATGCACTAACAGGAGATACCCATCGTGACAAAGGTTTGGTGATGTTGCTTCAAAATGTTCAATACTTGTTTGATACTGATGACATCAGAAAGAAAAAAGACAAATGCAGTGACAATTCTGATGCAATCAACAATGGAAGCAAGAACAAAAGTTCTGAAATAGCAAATGAATCTAAAGACAAAGTTCTGAAGAATTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTGGAGAAAGCTTCACACGATACATTTTCATCGGATTATCAGAAGTACAGCCAAAAGCTACGGCAATTAGCGTTTAATCTCAAGAACAATGCATTTCTGTTACACCGTCTATTAGATGGGGAGCTAGAGGCTTCAAAAATATTGAGTATGACACCTACTGAATTGAAGGAGGGTTTGACTGCTGAGGAAATATCCAAGAGCGAGCCTGATGAACCACAGCACATGCAGATGACGGATGCTCGCTGCAAACTTTGCTCAGAGCGTACAGTGGGAGTGAGGGATATTATCCGCGCAGGACATGCTGACCGATATATGCTAGAATGCACCTCTTGTGGTCATTCCTGGTCTGCCTCTCGTGATGCGGTGTCTGTGCTGACATTAGACGCATCCGATTCAAAAAGAAATGTAGGCTCAGCCCCATGGGCTACTGCAAAATTTGAAGATGCTGGGAAGAAGTTGGTGAGTCCCCGTGAATCCGACAAGTCGGCCAACGACATCTTTATGCCGCCTGTATTGGAAGCCCAGAGATCATTTGGCAAGTCCAGGAAAGATGAAAATGTTGAAGCTTCAAGACGTGCTGACTAG 1740 0.431 MVTRRFISTSDDEDDSPPPPPPPSNNHRKRKLHEESHDDDDDDDDDEKEEEDPSSEEDEDDSPVEDAKPIGEPVRVSGKGKGRKKHFHSFEFDGDQYNLEDPVLLVPEVKDQKPYVAIIKDITQNIEGSLMITGQWFYRPDEAEKKGGGSWQSNDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQIPTRKQYPGFIVQKVYDTDEMKLWKLTDKDYEDGNQQEIDELVQKTLQRLGDLPDIETDEAPTDHEDLMRSKRILKKKSISHLDVSREDETSRKSFQHLKPETPGSTSEHYRILVKFNALTGDTHRDKGLVMLLQNVQYLFDTDDIRKKKDKCSDNSDAINNGSKNKSSEIANESKDKVLKNSKSFVWPDVAVPAVVALEKASHDTFSSDYQKYSQKLRQLAFNLKNNAFLLHRLLDGELEASKILSMTPTELKEGLTAEEISKSEPDEPQHMQMTDARCKLCSERTVGVRDIIRAGHADRYMLECTSCGHSWSASRDAVSVLTLDASDSKRNVGSAPWATAKFEDAGKKLVSPRESDKSANDIFMPPVLEAQRSFGKSRKDENVEASRRAD 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05436 579 MobiDBLite consensus disorder prediction 38 65 - -
Trre7g05436 579 MobiDBLite consensus disorder prediction 336 360 - -
Trre7g05436 579 Gene3D - 20 197 IPR043151 -
Trre7g05436 579 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 573 - -
Trre7g05436 579 SMART mid_6 345 450 IPR003618 GO:0006351
Trre7g05436 579 MobiDBLite consensus disorder prediction 1 83 - -
Trre7g05436 579 Pfam Transcription factor S-II (TFIIS), central domain 308 456 IPR003618 GO:0006351
Trre7g05436 579 CDD BAH_plant_3 77 223 - -
Trre7g05436 579 ProSiteProfiles TFIIS central domain profile. 312 468 IPR003618 GO:0006351
Trre7g05436 579 Pfam BAH domain 96 211 IPR001025 GO:0003682
Trre7g05436 579 Gene3D - 301 442 IPR036575 GO:0006351
Trre7g05436 579 ProSiteProfiles BAH domain profile. 95 214 IPR001025 GO:0003682
Trre7g05436 579 MobiDBLite consensus disorder prediction 562 579 - -
Trre7g05436 579 SMART BAH_4 95 214 IPR001025 GO:0003682
Trre7g05436 579 MobiDBLite consensus disorder prediction 533 579 - -
Trre7g05436 579 SUPERFAMILY Elongation factor TFIIS domain 2 376 441 IPR036575 GO:0006351
Trre7g05436 579 MobiDBLite consensus disorder prediction 272 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05436 Trre-Chr7 60297770 60302843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05436 - - cam:101501082 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05436 7 60297770 60302843 Trre7g05436 7 60297770 60302843 ECH
Trre9g00358 9 2558763 2562676 Trre7g05436 7 60297770 60302843 PCT