Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00294 ATGGCTTCGCGCGTCACTTCTCCTTCTTATTTAAACTCTTCACGCTTTCTATCACCTTCTAAATTTTCCAATTCCTCATTCCAAATCCAAAACGGTGTTTCTTCCACCATGCTCAACAAAACCGTTCTCGTTACTGGCGGTGCCGGTTACATCGGTAGCCACACCGTTCTTCAGCTTTTACTCGGTGGTTTCAAAGCTGTCGTCGTTGATAATCTTGATAATTCCTCCGAAGTTGCTATTCACAGAGTTAAAGAACTCGCCGCTGAATTCGGGAATAACCTCAATTTTCATAAGGTAGACCTCCGGGACAGGGCTGCACTAGAGCAAATTTTTGCTTCCACAAAGTTTGATGCAGTCATACATTTTGCTGGAATGAAAGCAGTGGGGGAAAGTGTGCAGAAACCGTTACTCTACTACAACAACAACTTGATTGGGACAATTACTCTACTAGAAGTCATGGCTGCTCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTTCCTCTGTCAGCAGCAAACCCATATGGACGAACCAAGCTTACTATTGAAGAAATTTGCCGTGATGTCTATCATGCTGATCCAGATTGGAAAATTATATTATTGAGATATTTCAATCCTGTGGGTGCACACCCTAGTGGTTATATTGGGGAGGATCCTCGCGGAATTCCTAACAATCTCATGCCATTTATTCAGCAAGTAGCGGTTGGCAGGCGGCCTGCACTGACAGTTTTTGGAACTGATTATAAGACAGTTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGCCACATTGCTGCATTGCATAAACTAGAAGAAGCTGATATTGGTTGTGATGTTTATAACTTGGGGACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAACAGGCATCTGGAAAGCAAATTCCACTGGTGAAGGCCGGCCGTAGACCCGGTGATGCTGAAATTGTTTATGCATCAACAAAAAAAGCTGAAAGAGAACTCAAGTGGAAGGCAAAATATGGAATTGATGAAATGTGCCGTGATCAATGGAACTGGGCCAGCAAAAATCCTTACGGCTATGGATCTCCAGATTCCACGGATTAG 1158 0.4361 MASRVTSPSYLNSSRFLSPSKFSNSSFQIQNGVSSTMLNKTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSEVAIHRVKELAAEFGNNLNFHKVDLRDRAALEQIFASTKFDAVIHFAGMKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVYHADPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFIQQVAVGRRPALTVFGTDYKTVDGTGVRDYIHVVDLADGHIAALHKLEEADIGCDVYNLGTGKGTSVLEMVRAFEQASGKQIPLVKAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGSPDSTD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00294 385 Gene3D - 42 311 - -
Trre9g00294 385 NCBIfam UDP-glucose 4-epimerase GalE 42 376 IPR005886 GO:0003978|GO:0006012
Trre9g00294 385 Gene3D - 230 371 - -
Trre9g00294 385 FunFam UDP-glucose 4-epimerase 42 234 - -
Trre9g00294 385 CDD UDP_G4E_1_SDR_e 41 370 IPR005886 GO:0003978|GO:0006012
Trre9g00294 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 377 IPR036291 -
Trre9g00294 385 PANTHER UDP-GLUCOSE 4-EPIMERASE 39 379 - -
Trre9g00294 385 Pfam GDP-mannose 4,6 dehydratase 43 366 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00294 Trre-Chr9 2081728 2085635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00294 41 355 Miscellaneous Gene Families AT4G00110 27.545 1.09e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00294 K01784 - gmx:100818509 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00294 9 2081728 2085635 Trre9g00294 9 2081728 2085635 ECH
Trre9g00294 9 2081728 2085635 Trre7g05566 7 61257256 61260802 PCT