Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05566 ATGTCAAACAAAACCATTCTCATCACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTCCTCCAGCTTCTTCTCGGCGGTTACAAAGCCGTCATCGTAGATAATCTCGACAATTCTTCTCAAAAATCCATCGACAGAGTCAAACAACTCGCCGCTGAGTTCGCCGGTAACCTTTCATTTCATAAGTTGGACCTGCGGGACAGAAATGGACTTGAGAAAATCTTTTCTTCTACAAAGTTTGATGCGGTTATACATTTTGCTGGACTGAAAGCAGTCGGTGAAAGTGTGCAAAAACCACTGCTCTACTATGACAACAACTTGATTGGGACAATTGTTCTATTTGAAGTCATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCCTCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTCCCCTGCACTGAAGAGTTCCCTTTGTCAGCTGCAAGCCCCTATGGAAGAACCAAGCTATACATTGAAGAATTTTGTCGTGATATCTACCGTTCAGATCCAGAGTGGAAAATAACACTGTTGAGGTACTTCAACCCTGTTGGGGCACATCCTAGTGGCCAAATTGGCGAGGATCCTCGTGGAATTCCCAACAACCTCATGCCTTTTGTTCAGCAAGTTGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAACAGATTATAGCACAAGTGATGGAACTGGAGTTCGCGATTACATTCATGTTGTTGATCTAGCAGATGGGCACATTGCTGCATTGCGTAAACTAGATGATCCCAAGACAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCGGTTTTTGAGATGGTTAAAGCTTTCGAACAGGCCTCTGGAAAGAAAATTCCAATTGTAAAGGCTGATAGGAGACCTGGAGATGCTGAAGTTGTTTATGCATCAACAGCAAAAGCAGAAAAAGAACTGAACTGGAAGGCAAAATATGGCATCGATGATATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGTGAATCTAATTAA 1041 0.4467 MSNKTILITGGAGYIGSHTVLQLLLGGYKAVIVDNLDNSSQKSIDRVKQLAAEFAGNLSFHKLDLRDRNGLEKIFSSTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAASPYGRTKLYIEEFCRDIYRSDPEWKITLLRYFNPVGAHPSGQIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGTDYSTSDGTGVRDYIHVVDLADGHIAALRKLDDPKTGCEVYNLGTGKGTSVFEMVKAFEQASGKKIPIVKADRRPGDAEVVYASTAKAEKELNWKAKYGIDDMCRDQWNWASKNPYGYGESN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05566 346 Gene3D - 6 275 - -
Trre7g05566 346 PANTHER UDP-GLUCOSE 4-EPIMERASE 2 344 - -
Trre7g05566 346 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Trre7g05566 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 341 IPR036291 -
Trre7g05566 346 Gene3D - 194 335 - -
Trre7g05566 346 NCBIfam UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Trre7g05566 346 FunFam UDP-glucose 4-epimerase 6 199 - -
Trre7g05566 346 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05566 Trre-Chr7 61257256 61260802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05566 5 319 Miscellaneous Gene Families AT4G00110 27.628 4.95e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05566 K01784 - csv:101205820 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00294 9 2081728 2085635 Trre7g05566 7 61257256 61260802 PCT