Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00030 ATGAAGATTTGGAAGTTTTCAGTGTTTTTGTTTGTAGGGTTTGTGTTGACTGGTATGTCAATGGGCAGATTCGTAGTTGAGAAGAACAGTTTGTCGGTTACTTCGCCTGATAATATTAAAGGCAAACAAGACAGTGCGATCGGCAACTTCGGTATACCTCAATACGGTGGTAGCATGGCCGGTAACGTCGTTTACCCTAAAGATAACATTAAGGGTTGCAAAGACTTCGATCAATCCTTCAAATCTAGCACTGGTGCTCTTCCCACCATCCTTTTACTCGATCGTGGAAATTGCTTTTTTGCTTTGAAGGTTTGGAATGCACAGAAGGCTGGAGCTTCTGCAGTTCTTGTTGCTGATGATATTGAAGAACCCTTAATTACTATGGACACACCCGAAGAGGATGGATCCTCTGCTCAATACATTCAGAACATAACAATACCGTCTGCTCTTATTGGAAAAACTTTTGGTCACAAGTTGAAGGATGCCATCCGTGGTGGGGATATGGTCAATGTTAATCTTGACTGGAGAGAGGCTGTTCCTCACCCTGATGATCGTGTCGAGTATCAGTTGTGGACAAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATTGAATTTTTGAAGGATTTCAAGGGTGCCGCACAGATCTTAGAGAAAGGAGGTTACACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCATGCATTTACATTGAGTAAACAGTGTAAGTCTCAATGCATAAACCATGGAAGATATTGCGCCCCCGACCCTGAGCAGGACTTCAGCACAGGTTATGATGGGAAAGATGTGGTTGTTGAAAATTTGAGGCAGCTATGTGTTTTCAAGGTGGCTAAAGAAGCTGAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCTATGAAGGAGAAAAAGTACAACAAGGAATGTGCAAATGGCGTCATTAAATCTCTGGGTCTTGACATTGGAAAGATTGACAAGTGCATGGGAGACCCTGATGCCGATACTGAAAATACCATTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCACGTGGTGATGTTACTATATTGCCTACACTTGTCGTCAATAACAGACAATATCGAGGTAAACTGGAGAAAGGTGCTGTTCTAAAGGCTATTTGTTCTGGGTTTGAAGAAACTACTGACCCAGCTGTTTGTTTGAGCAACGATGTGGAGACAAATGAGTGCTTGACAAACAACGGTGGTTGTTGGCAGGATAAAGTAGCTAATATCACTGCATGCAAGGATACATTCCGTGGGCGAGTATGTGAATGCCCCTTGGTTGATGGTGTGCAATTCAAAGGAGACGGTTATACAACTTGTGAAGTCGGTGGACCTGGGCGTTGCAAGATTAACAATGGAGGCTGTTGGCACGATGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATGATGGGGGAGTTAAATGCCAGTGTCCTACCGGGTTTAAAGGCGACGGTGTAAAAAATTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGTCCGGAATGTAGCTGCAAAAATACCTGGGGCAGCTATAACTGCAGTTGTAGCGGAGATCTTCTGTATATCAAGGACCATGATACCTGCATAAGTAAAACTGCCAGTCAGGCAAAATCTAGTTGGGCTGCTTTTTGGGTCATTCTGATTGGATTGGGTATGATTGCTGGAGGGGGATTCCTTGTGTACAAATATAGAATTAGGCAATACATGGATTCTGAAATCAGGGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAATTTCCAAATCACGTCAATCATGAAAGAACTTGA 1872 0.43 MKIWKFSVFLFVGFVLTGMSMGRFVVEKNSLSVTSPDNIKGKQDSAIGNFGIPQYGGSMAGNVVYPKDNIKGCKDFDQSFKSSTGALPTILLLDRGNCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGSSAQYIQNITIPSALIGKTFGHKLKDAIRGGDMVNVNLDWREAVPHPDDRVEYQLWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVFKVAKEAEKPWVWWDYVTDFQIRCPMKEKKYNKECANGVIKSLGLDIGKIDKCMGDPDADTENTILKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKVANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEVGGPGRCKINNGGCWHDARNGHAFSACLDDGGVKCQCPTGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYNCSCSGDLLYIKDHDTCISKTASQAKSSWAAFWVILIGLGMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEFPNHVNHERT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00030 623 Gene3D Laminin 517 554 - -
Trre9g00030 623 Gene3D Laminin 466 516 - -
Trre9g00030 623 CDD PA_VSR 49 173 - -
Trre9g00030 623 Pfam Complement Clr-like EGF-like 495 515 IPR026823 -
Trre9g00030 623 Pfam PA domain 60 159 IPR003137 -
Trre9g00030 623 ProSitePatterns Calcium-binding EGF-like domain signature. 512 538 IPR018097 GO:0005509
Trre9g00030 623 FunFam Vacuolar-sorting receptor 1 21 182 - -
Trre9g00030 623 CDD EGF_CA 512 540 - -
Trre9g00030 623 FunFam vacuolar-sorting receptor 1 405 461 - -
Trre9g00030 623 Gene3D - 21 182 - -
Trre9g00030 623 SUPERFAMILY PA domain 30 149 IPR046450 -
Trre9g00030 623 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 8 612 - -
Trre9g00030 623 ProSitePatterns EGF-like domain signature 2. 496 510 IPR000742 -
Trre9g00030 623 SMART egfca_6 512 554 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00030 Trre-Chr9 399855 403530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00030 22 623 Miscellaneous Gene Families AT2G14740 82.975 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00030 - - tpra:123911000 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00030 9 399855 403530 Trre9g00030 9 399855 403530 ECH
Trre9g00030 9 399855 403530 Trre1g05768 1 62562105 62567380 PCT