Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05768 ATGAAGATTCCAAGTTCTTCTTCTCTGGGTTTATTTCTAGGGTTTCTTTTACTTTCGTTGACGCCATCGTCAATGGCCAAATTCGTGGTGGAGAAGAATAGCTTGAGGGTTACTTCGCCGGATAGTATCAAGGGAACATACGATAGCGCGATTGGTAACTTTGGAATACCTCAATACGGTGGTAGCATGGCTGGTAACGTTGTGTTTCCTAAGGAAAATCAGAAGGGTTGTAAGGAGTTTGCTGATTCTGGAATTTCCTTCAAATCTAAGCCTGGTGCTCTTCCCACAATCGTTTTGCTCGATCGTGGAAATTGCTTCTTTGCTTTGAAGGTGTGGAATGCCCAAAAGGCTGGAGCTTCTGCTGTTCTTGTTGCCGATGATATTGAGGAAAAATTAATAACCATGGATACACCTGAAGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCGTCGGCTCTTATTGAAAAGAGTTTCGGTGGAAAGTTAAAGAGTGCCATAAGTAGTGGGGAGATGGTTAACGTAAATCTTGATTGGAGAGAGGCGGTCCCCCACCCAGATGATCGCGTGGAGTATGAGCTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGCGATATGCTGATGGAATTTGTGAAGGATTTTAAGGGTGCGGCACAAATATTGGAGAAAGGTGGTTATACTCAGTTTACACCCCACTATATAACTTGGTACTGTCCTCAGGCATTCACGTTAAGTAAGCAGTGCAAGTCCCAGTGCATTAACCATGGAAGATATTGTGCTCCAGATCCTGAGCAAGATTTCAGCACTGGTTATGACGGGAAAGATGTGGTTACTGAAAACTTGAGGCAGTTGTGTGTTTTCAAGGTTGCAAATGAAACGAAAAAGCCTTGGGTGTGGTGGGACTATGTCACCGATTTCCAAATCAGGTGCCCTATGAAGGAGAAAAAATACAACAAGAAATGTGCCGATGCTGTTATTGAATCACTTGGTCTTGATATTAAAAAGATTGAACGGTGTATGGGAGATCCAGATGCCGATTCCGAAAATTCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAGGGATCACGAGGCGATGTTACCATATTGCCTACTCTAGTTGTCAACAGTCGACAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAGCCAGCTGTTTGTTTGAGCAGCGATGTCGAGACAAATGAGTGCTTGGAGAACAATGGTGGTTGTTGGTTGGATAAAGGAGCTAACATAACTGCATGCAAGGATACTTTCCGTGGACGAGTATGTGAATGCCCCTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACATGCGAAGCTAGTGGACCAGGACGGTGCAAGATAAACAATGGAGGTTGTTGGCATGAAGCCCGCAATGGACATGCATTTTCTGCTTGTTCGGATAATGGAGGGGTTAAATGCGAGTGTCCTGCAGGGTTTAAAGGTGATGGTGTTAAAAATTGTGCAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGCAGCTATAACTGCACTTGTAGTGGGGATCTTCTCTATATCAGGGACCATGATACCTGCATAAGTAAAACTGCTGCTAATCAGGAAGGAAAGTCTGCTTGGGCTGCATTTTGGGTCATTGTAGTCGGCTTAGTTTTGGCCGCTTCAGGGGGATACCTTGTCTACAAATATAGAATAAGGTCATACATGGATTCTGAAATAAGGGCCATCATGGCACAGTATATGCCTTTGGATAGCCAAGGAGAAGTTGTAAATCATGTTAACGATGAAAGAGCATGA 1899 0.4344 MKIPSSSSLGLFLGFLLLSLTPSSMAKFVVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVVFPKENQKGCKEFADSGISFKSKPGALPTIVLLDRGNCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGGKLKSAISSGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVTENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDPDADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSDVETNECLENNGGCWLDKGANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACSDNGGVKCECPAGFKGDGVKNCADIDECKEKKACQCPECSCKNTWGSYNCTCSGDLLYIRDHDTCISKTAANQEGKSAWAAFWVIVVGLVLAASGGYLVYKYRIRSYMDSEIRAIMAQYMPLDSQGEVVNHVNDERA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05768 632 MobiDBLite consensus disorder prediction 349 369 - -
Trre1g05768 632 FunFam Vacuolar-sorting receptor 1 25 189 - -
Trre1g05768 632 Gene3D Laminin 524 561 - -
Trre1g05768 632 ProSitePatterns Calcium-binding EGF-like domain signature. 519 545 IPR018097 GO:0005509
Trre1g05768 632 CDD PA_VSR 53 180 - -
Trre1g05768 632 MobiDBLite consensus disorder prediction 349 366 - -
Trre1g05768 632 Pfam PA domain 64 163 IPR003137 -
Trre1g05768 632 SUPERFAMILY PA domain 84 150 IPR046450 -
Trre1g05768 632 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 15 621 - -
Trre1g05768 632 Gene3D Laminin 412 468 - -
Trre1g05768 632 FunFam vacuolar-sorting receptor 1 412 468 - -
Trre1g05768 632 Gene3D - 25 189 - -
Trre1g05768 632 SMART egfca_6 519 561 IPR001881 GO:0005509
Trre1g05768 632 Gene3D Laminin 473 523 - -
Trre1g05768 632 Pfam Complement Clr-like EGF-like 502 522 IPR026823 -
Trre1g05768 632 CDD EGF_CA 519 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05768 Trre-Chr1 62562105 62567380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05768 26 632 Miscellaneous Gene Families AT2G14740 84.349 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05768 - - gmx:100803958 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05768 1 62562105 62567380 Trre1g05768 1 62562105 62567380 ECH
Trre9g00030 9 399855 403530 Trre1g05768 1 62562105 62567380 PCT