Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00025 ATGTCTTCTTCTTCTTCTACTGCTAGTTTGATTTTTGTAAACATTATCATCATCGTCCTTTTCCAATGTTTTCTCCCATCCCTCTCAACAAACTCGGAAGGAAACGCACTTCATGCTTTGAGAACCAGGCTTTCTGATCCCAACAACGTTCTACAGAGCTGGGACCCAACTCTTGTTAACTCCTGCACTTGGTTCCATGTTACCTGTGACTCTAACAATCACGTTATTCGCTTAGACTTGGGCAATTCTAACATCTCTGGATCTTTGGGCCCCGAACTGGCCCAACTAACCCACCTCCAATACCTAGAGCTATATAACAATAACATAAATGGCAACATTCCTGAGGAACTTGGTAACTTAAAGAACCTTATTAGTATGGATTTGTATAATAACAACTTTCAAGGCAATATCCCAAAGTCCTTTGCCAACTTGAAGGCAATTAAATTCCTACGCCTAAACAACAACAAGCTCACAGGATCCATCCCAAGAGAACTCACTCATCTTAAAAACCTCAAAATCTTTGATGTTTCCAGTAATGACCTCTGTGGAACAATACCAGTAGATGGCAACTTTGGATCTTTCCCACCTCAAAGTTATGAAAACAACAGACTCAATGGCCCAGAACTAAAAGGACTGGTTCCTTATGATTTTGGATGCTAA 660 0.4045 MSSSSSTASLIFVNIIIIVLFQCFLPSLSTNSEGNALHALRTRLSDPNNVLQSWDPTLVNSCTWFHVTCDSNNHVIRLDLGNSNISGSLGPELAQLTHLQYLELYNNNINGNIPEELGNLKNLISMDLYNNNFQGNIPKSFANLKAIKFLRLNNNKLTGSIPRELTHLKNLKIFDVSSNDLCGTIPVDGNFGSFPPQSYENNRLNGPELKGLVPYDFGC 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00025 219 SUPERFAMILY L domain-like 30 206 - -
Trre9g00025 219 Gene3D Ribonuclease Inhibitor 29 210 IPR032675 -
Trre9g00025 219 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 194 - -
Trre9g00025 219 FunFam Somatic embryogenesis receptor kinase 1 29 214 - -
Trre9g00025 219 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Trre9g00025 219 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00025 Trre-Chr9 373575 374956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00025 6 207 Receptor kinase-like Gene Family AT1G71830 56.158 2.93e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00025 - - cpap:110810476 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00025 9 373575 374956 Trre9g00025 9 373575 374956 ECH
Trre9g00025 9 373575 374956 Trre1g05784 1 62690435 62692732 PCT