Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05935 ATGCATAGCCATGGGGGAAAGAAATCTATGCAATCAACCTCTGAATCTAGTGAAGGGCACTTACAGAGGACCAACGGAAGCAGTTTCTTTCACGGCGGCTCCAGTGGCCGCCGCCAAGAAAATTTGCAAGAAACCGAGTACACAAGCCGATACGGAAAAATCAGCTTCGAGGCTGGGAGCTCTAGCAAGAGCAAGGAAATGTCGAGACTGATGCTGAATCCGGCGAAGAATCACAAGCCGGAAACGTATGAGGACTTGAAACTCGATGGTTCTTCTTTGATTTTAAGCTCATTGGAAATGCACCTTCCGCGCCACTTGCTTCGTGCTCCTCGCGACCAGAAATTTACTTACATGCGCGATATTTTGCACGATTATGTGCCTCCAGCATTGCGTTACAGAGATCAAATGCAAAAAGAATATAGAGAGAAGATAATGTCAAGCTATCAGCCTCTGCATCAAGAGTTGTACACTATTGATCCTGTAGCATTCTTTGTACCGACATTTCTGAAAGCAATTAATGATAATACGGAAAAAAGCTTTAGAAGTATAATGTCTGAACCCGTTCCAGGAATTTTTACATTTGAAATGCTTCAACCACGTTTTTGTGAGTTACTGATATCTGAGGTCGAACATTTTGAGAAGTGGGTTGACAGAACAAAATTCAATGTAATGCGTCCCAATACAATGAATCAATATGGTGCTGTACTTGATGACTTTGGCCTTCAAACCATGCTTAACAAGCTTATGGAAGATTTTATTTCTCCATTGTCAAAAGTGTTCTATGCAGAACTTGGTGGATCAACCCTGGATTCTCACCATGGGTTTATTGTTGAATTTGGCATGCATAGAGATGTTGAAATGGAATTCCATGTGGATGACTCAGAAGTTACCTTAGATGTTTGCCTGGGTAGGCAGTTTTCTGGAGGAGAATTGTACTTTCGGGGCATGCGATGCAATAAACATATAAATACAATTAGTCGTTCAGAGGAGATCTTTGATTATTCACATGTCCCTGGTTGTGCTGTGCTTCATCATGGTCGTCATCGCCATGGTGCTAGAGCCACAATTGCTGGTCATCGGGTCAACCTACTTCTGTGGTGCAAAAGTTCTTTATTTAGAGAAATGCAAAAGTTTAAAAGAGATTTCTATAGCTGGTGTACTGAGTGCAATCAGGAGAAGAAAGATAAGCAAGATAAGCTGCTCTCGGAATACGAGACTGCCGAAATGGTAAATAATTGTGTAATCTGCATTCTTCATGCTCATACATTGCATTCTAGGAATGGTGTGGCAGTCACATTAATATTTGTCACCTGGCTCGCAACACTGTCACCAGTACAGCTAGTGTTGGCCAATTGCTATTACCTAGGGATATAA 1374 0.4185 MHSHGGKKSMQSTSESSEGHLQRTNGSSFFHGGSSGRRQENLQETEYTSRYGKISFEAGSSSKSKEMSRLMLNPAKNHKPETYEDLKLDGSSLILSSLEMHLPRHLLRAPRDQKFTYMRDILHDYVPPALRYRDQMQKEYREKIMSSYQPLHQELYTIDPVAFFVPTFLKAINDNTEKSFRSIMSEPVPGIFTFEMLQPRFCELLISEVEHFEKWVDRTKFNVMRPNTMNQYGAVLDDFGLQTMLNKLMEDFISPLSKVFYAELGGSTLDSHHGFIVEFGMHRDVEMEFHVDDSEVTLDVCLGRQFSGGELYFRGMRCNKHINTISRSEEIFDYSHVPGCAVLHHGRHRHGARATIAGHRVNLLLWCKSSLFREMQKFKRDFYSWCTECNQEKKDKQDKLLSEYETAEMVNNCVICILHAHTLHSRNGVAVTLIFVTWLATLSPVQLVLANCYYLGI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05935 457 SMART p4hc 189 368 IPR006620 GO:0005506|GO:0016705|GO:0031418
Trre7g05935 457 Gene3D q2cbj1_9rhob like domain 191 369 - -
Trre7g05935 457 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 270 369 IPR005123 -
Trre7g05935 457 MobiDBLite consensus disorder prediction 1 46 - -
Trre7g05935 457 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 33 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05935 Trre-Chr7 63822118 63829445 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05935 - - tpra:123918393 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03785 3 48897665 48904575 Trre7g05935 7 63822118 63829445 ECH
Trre7g05935 7 63822118 63829445 Trre7g05935 7 63822118 63829445 ECH
Trre7g05935 7 63822118 63829445 Trre3g03785 3 48897665 48904575 PCT