Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05433 ATGGCTACAATCTCCCGAGTCGCTTCTTCCTCTCTTCGCCACGACACAATTCCACCGCATAACTTCCATATTCGGAAAACCTCCTTATCTTTCTCTTCAATTGATTCGTTGAAGAGAATTGTTACTTCCGGTGGCCGTAGATTGATTGTTGCTGCTAGTCCTCCAACTGAAGATGCTGTTGTTGCTACTCATCCTCTTACTAAACAGGATCTCATCGATTATCTTGCTTCTGGTTGTAAAACCAAGGATAAATGGAGAATAGGTACTGAACATGAAAAGTTTGGTTTTGAGCTTGGAAGCTTGCGTCCTATGAAGTATGAGCAAATATCAGAATTGCTGAATGGCATTGCTGAGAGATTTGACTGGGAAAAAGTAATGGAAGGTGATAACATTATAGGACTCAAACAAGGGAAGCAGAGCATATCATTGGAGCCAGGAGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACTTTGCATCAAACTTGTGCTGAAGTTAATTCGCACCTCTATCAAGTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGTATTGGTTTCCAGCCAAAGTGGGAACGCAAAGACATACCTATGATGCCAAAGGGAAGATATGAGATTATGAAAAACTACATGCCTAAAGTTGGTTCTCTCGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTCAGTTCTGAAGCCGACATGATCAGGAAATTTCGTGCTGGCCTAGCTTTGCAGCCTATAGCAACAGCTCTTTTTGCAAATTCACCCTTCACAGATGGAAAGCCCAATGGGTTTGTTAGTATGAGAAGCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTTTTTGACGACTCCTTTGGGTTTGAGCAGTACGTTGACTATGCTCTTGATGTTCCAATGTATTTTGTCTATCGGAAAAAGAAATATATCAACTGTACTGGAATGACCTTCAGGGACTTTTTGGCAGGAAAGCTTCCTTGTATTCCTGGTGAATTACCCACTCTTAATGATTGGGAGAATCATTTGACCACTATATTTCCCGAGGTTAGGCTAAAGAGGTATTTGGAGATGAGAGGTGCTGACGGAGGGCCTTGGAGAAGGTTATGTGCTTTACCAGCATTTTGGGTAGGGATATTGTATGATGAGGTTTCTTTGCAACGTGTTTTGGATTTGACAGCAGATTGGACTCTAGAAGAAAGACAAATGCTAAGGAATAAGGTCACTGTAACCGGTCTAAAGACACCATTTCGAGATGGTTTGCTGAAGCATGTTGCTGAAGAGGTTCTAGAGTTGGCAAAGGATGGCTTGGAAAGAAGAGGCTATAAGGAATCAGGATTTTTAAATGCGGTAGCTGAGGTGGTTAGAACAGGTGTTACTCCAGCTGAGAGGCTTTTGGAATTGTATCATGGAAAGTGGGAGCAATCTGTAGATCATGTATTTGAGGAATTGCTTTATTAA 1500 0.422 MATISRVASSSLRHDTIPPHNFHIRKTSLSFSSIDSLKRIVTSGGRRLIVAASPPTEDAVVATHPLTKQDLIDYLASGCKTKDKWRIGTEHEKFGFELGSLRPMKYEQISELLNGIAERFDWEKVMEGDNIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWERKDIPMMPKGRYEIMKNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTDGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYINCTGMTFRDFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGILYDEVSLQRVLDLTADWTLEERQMLRNKVTVTGLKTPFRDGLLKHVAEEVLELAKDGLERRGYKESGFLNAVAEVVRTGVTPAERLLELYHGKWEQSVDHVFEELLY 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05433 499 Pfam Glutamate-cysteine ligase family 2(GCS2) 118 407 IPR006336 GO:0004357|GO:0042398
Trre7g05433 499 Gene3D - 51 499 - -
Trre7g05433 499 FunFam Glutamate--cysteine ligase 51 499 - -
Trre7g05433 499 NCBIfam glutamate--cysteine ligase 65 499 IPR011556 GO:0004357|GO:0006750
Trre7g05433 499 SUPERFAMILY Glutamine synthetase/guanido kinase 77 497 IPR014746 GO:0003824
Trre7g05433 499 PIRSF GCL 53 499 IPR035434 GO:0004357|GO:0006750
Trre7g05433 499 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 40 499 IPR035434 GO:0004357|GO:0006750
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05433 Trre-Chr7 60269253 60275647 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05433 K01919 - gmx:547545 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05433 7 60269253 60275647 Trre7g05433 7 60269253 60275647 ECH
Trre9g00361 9 2577958 2581659 Trre7g05433 7 60269253 60275647 PCT