Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05388 ATGTCTAGTCTCGGTGGTTCTTCCCGAAAGAGTAGTTCGTTTTCGACTAGCCCTACGCGGTCAAAGAAGAAAGCCTCTGATTATTCACCACTGGACGCCACTTTTCGTAAACCATTTCCTTCTATGCGCACCACCACGGGAGAGCGAACTGTGAAATCATTGCGACTTTCAAAGGCATTGACAGTGCCTGAAACTACAACTGTCTATGAAGCTTGCCGTCGGATGGCTGCTCGGAGAGTAGATGCTCTATTATTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAACAACAAGAGTTATTGCCCGTGAGGTTAATCTTGAAGACACACCTTGTTCCATGGTTATGACAAGGAATCCGGTATTTGTCCTTACTGACACTCTTGCTGTCGAAGCACTTCAAAAGATGGTGCAAGGGAGATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTGGTTGCTATCCTTGACATAGCTAAGTGTTTATATGATGCCATTGCCCGTATGGAAAGGGCCGCAGAGAAGGGAAAGGCAATTGCAGCAGCTGTTGAAGGTATCGAAAAACACTGTGGAGCATCTCCCTCTGGCTCCAATTCATCATTCATTGATACTCTTCGGGAGCAGATATTTAAGCCATCATTGTCTACAATCATTCCTGAGAATTCAAAGGTTGCTACAGTTTCATCAACAGATTCAGTTTTGTCAACAACAAAAAAGATGCTTGAACTTCGTGCAAGTGCTGCTGTTGTAACAGTTGATAACAAACCTTGCGGTATCCTTACTTCAAAGGATATCTTGATGCGAGTAATAGCACAAAATCTCTCCCCATCGTCAACTCTTGTTGAGACGGTCATGACTGCAAATCCGGAATGTGCAATAATTGATACACCAATTGTTGATGCACTTCACATAATGCATAATGGAAAATTTTTGCACCTTCCCGTGGTTGATAGAGATGGCATTGTTGTTGCTACGGTTGATGTGATTAATATCACTCATGCTGCTGTGGCTACAGCTAGTCAGGCTGGGAATACTGCCAATATTAACAATGAAGCTGCCAACTCCATGATACAAAAGTTTTGGGATTCGGCCATGGCCTTCACTCCAAATGACGAGGAAGAAGATTCACAAAGCGAAACTTCTTTGAAATTGATTTCCGAGGGAGGAGAAACAGGGAGATCCATTCCTTATAATTCATCAAGCATGCAGACCACATTTTCCTTCAAATTACAAGATAAGAAGGGTAGATTGCATAGATTCACATGCGATACCCGGAGCTTGACAGAAGTTATAACTTGCATCATTCAGAGAGTAGGCGATGACATTAACCCCAAGAACCAGCCCCAAATTTTGTATGAAGATGAAGAGCATGATAAAGTTGTATTGGCTTCCGATAGTGATCTCGCGGCTGCTGTGGACCATGCAAAGATGGCTGGTTTGAAGGGATTGAGATTGCACTTAGATTACTCAGGAACATGTGGTTATGGAACAGAATCAAGTTTAAATTTGGAATATGCTAATTCAGAAGCATGGGCCTCGGCCTATCATGCCGTTGCAGCTGGAGCTGCAGTTGTTGCTGCCTTAGGCTTATTAGCGTTATTCAAAAGAAGACAATGA 1632 0.4301 MSSLGGSSRKSSSFSTSPTRSKKKASDYSPLDATFRKPFPSMRTTTGERTVKSLRLSKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDITTRVIAREVNLEDTPCSMVMTRNPVFVLTDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHCGASPSGSNSSFIDTLREQIFKPSLSTIIPENSKVATVSSTDSVLSTTKKMLELRASAAVVTVDNKPCGILTSKDILMRVIAQNLSPSSTLVETVMTANPECAIIDTPIVDALHIMHNGKFLHLPVVDRDGIVVATVDVINITHAAVATASQAGNTANINNEAANSMIQKFWDSAMAFTPNDEEEDSQSETSLKLISEGGETGRSIPYNSSSMQTTFSFKLQDKKGRLHRFTCDTRSLTEVITCIIQRVGDDINPKNQPQILYEDEEHDKVVLASDSDLAAAVDHAKMAGLKGLRLHLDYSGTCGYGTESSLNLEYANSEAWASAYHAVAAGAAVVAALGLLALFKRRQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05388 543 ProSiteProfiles CBS domain profile. 55 115 IPR000644 -
Trre7g05388 543 Pfam PB1 domain 410 493 IPR000270 GO:0005515
Trre7g05388 543 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 24 478 - -
Trre7g05388 543 SMART PB1_new 410 495 IPR000270 GO:0005515
Trre7g05388 543 CDD CBS_pair_MUG70_1 56 172 - -
Trre7g05388 543 CDD PB1_MUG70 411 495 - -
Trre7g05388 543 SMART cbs_1 124 168 IPR000644 -
Trre7g05388 543 SMART cbs_1 228 275 IPR000644 -
Trre7g05388 543 SMART cbs_1 58 106 IPR000644 -
Trre7g05388 543 SMART cbs_1 293 341 IPR000644 -
Trre7g05388 543 Pfam CBS domain 226 272 IPR000644 -
Trre7g05388 543 Pfam CBS domain 286 331 IPR000644 -
Trre7g05388 543 Pfam CBS domain 120 161 IPR000644 -
Trre7g05388 543 Pfam CBS domain 57 102 IPR000644 -
Trre7g05388 543 ProSiteProfiles CBS domain profile. 290 348 IPR000644 -
Trre7g05388 543 ProSiteProfiles CBS domain profile. 222 282 IPR000644 -
Trre7g05388 543 ProSiteProfiles CBS domain profile. 121 179 IPR000644 -
Trre7g05388 543 MobiDBLite consensus disorder prediction 1 24 - -
Trre7g05388 543 SUPERFAMILY CAD & PB1 domains 403 499 - -
Trre7g05388 543 Gene3D - 199 353 IPR046342 -
Trre7g05388 543 Gene3D - 36 186 IPR046342 -
Trre7g05388 543 MobiDBLite consensus disorder prediction 1 48 - -
Trre7g05388 543 ProSiteProfiles PB1 domain profile. 408 495 IPR000270 GO:0005515
Trre7g05388 543 SUPERFAMILY CBS-domain pair 228 340 IPR046342 -
Trre7g05388 543 SUPERFAMILY CBS-domain pair 48 164 IPR046342 -
Trre7g05388 543 CDD CBS_pair_MUG70_2 226 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05388 Trre-Chr7 59947817 59952766 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05388 - - gmx:100783514 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05388 7 59947817 59952766 Trre7g05388 7 59947817 59952766 ECH
Trre5g04674 5 48711070 48716140 Trre7g05388 7 59947817 59952766 PCT