Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05281 ATGTCTCATGATGACTCTTCTCCGAACCAAACAACACCACAAGACTCACTAGCTGTTGTAACCGATGTAAATGTTCCACAACCTGAAAAAACACCTAATATTCCCTTAGAGCCAGAGCAACAACATTCACACCCTGAACCTCAGAATACCAAAAACAACCCTCTTGTTGAAACTGTCACTCTTCAGACTCATTTCTCCAAACCAGATACCGATTCTGCTGATGATACCTTCAAACAAGAACAAACCATCAAACCTTCTCAACCTGATCTTCCACAAAATGAAAACAAGCCACTCCAAGAGCTTAAAAATCTCATTCAACAAGCACTCAACAACCATGAATTCTCTTCTCCTTCACCCATAAAACAAGATAAACCACCCACCACCACCGTAGCTGCTGCACCTGAACCTGCAGAACAACCCGCTGCACAACCAAAGGTGGAGGAGGAAGTTACAACAAAGAAAGAGGAGGAAGAAGTCAAGGAAACCGTGGTAGCTTCTGTGGATGATGATGGAGCAAAAACTGTCGAAGCTATTGAAGAAAGCGTCGTTGCAGTTTCTTCCTCTGTTCCTGCTCCACAAGAACCTGCTGCAGAGAAAGATGAATCCAAAGATGAAGCTCCATTGCCATTACAACCTGAAGAAGTATCCATTTATGGCATACCACTCCTTGCAGATGAAAGGAGTGACGTGATTCTTATGAAATTTCTACGTGCAAGAGATTTTAAGGTGAAAGAAGCTTTCACAATGATCAAGAACACAATTCTCTGGAGAAAAGAATTTGGAATAGAGGAATTGATGGATGGGAAATTGGGCAATGAATTGGAGAAATTTGTTTACATGCATGGATTTGATAAGGAAGGTCACCCTGTGTGTTATAACATATATGGTGAATTTCAGAATAAGGAATTGTATAAGAAGTGTTTTTCTGATGAGGAAAAGAGACAGAATTTCCTTAGATGGAGAATTCAGTTCCTTGAAAAGAGTATTAGGAATTTGGATTTTAACAAAGATGGTATTTGCACTATTGTTCAGGTGAATGATCTTAAGGATTCTCCTGGGCCTGCTAAATGGGAACTTAGACAAGCTACAAAACAAGCCCTTCAATTGCTTCAAGACAATTACCCTGAGTTTGTGGCAAAACAGGTGTTCATCAATGTGCCATGGTGGTATTTGGCTGTGAATAGAATGATAAGTCCTTTCGTTACACAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCACCAGAGACCCTCTTGAGCTACATAGCTCCAGAGCAACTTCCTGTGAAGTATGGTGGATTAAGCAAAGATGGTGAATTTGGAAATTCAGATGCTGTTGTTACTGAGATCACAATAAAGCCAACATCAAAACATACTGTTGAATTTCCTGTTACTGAGAAATGTTTACTGTCTTGGGAGGTGAGAGTAATAGGATGGGAAGTGAGTTATGGTGCAGAATTTGTACCAAGTAATGAAGAAAGCTACACAGTAATTGTTCAAAAGGCTAGAAAAGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAAATTAGTGAACCTGGGAAAGTTGTTCTTACCATTGACAACACAAGTTCTAGGAAGAAAAAGCTTTTGTATCGTTTGAAAACCAAGTCTTCACTCTCTGACTGA 1665 0.3994 MSHDDSSPNQTTPQDSLAVVTDVNVPQPEKTPNIPLEPEQQHSHPEPQNTKNNPLVETVTLQTHFSKPDTDSADDTFKQEQTIKPSQPDLPQNENKPLQELKNLIQQALNNHEFSSPSPIKQDKPPTTTVAAAPEPAEQPAAQPKVEEEVTTKKEEEEVKETVVASVDDDGAKTVEAIEESVVAVSSSVPAPQEPAAEKDESKDEAPLPLQPEEVSIYGIPLLADERSDVILMKFLRARDFKVKEAFTMIKNTILWRKEFGIEELMDGKLGNELEKFVYMHGFDKEGHPVCYNIYGEFQNKELYKKCFSDEEKRQNFLRWRIQFLEKSIRNLDFNKDGICTIVQVNDLKDSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFVTQRTKSKFVFAGPSKSPETLLSYIAPEQLPVKYGGLSKDGEFGNSDAVVTEITIKPTSKHTVEFPVTEKCLLSWEVRVIGWEVSYGAEFVPSNEESYTVIVQKARKVASSEEPVLCNSFKISEPGKVVLTIDNTSSRKKKLLYRLKTKSSLSD 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05281 554 Gene3D - 200 259 - -
Trre7g05281 554 SMART sec14_4 272 439 IPR001251 -
Trre7g05281 554 Pfam CRAL/TRIO, N-terminal domain 223 252 IPR011074 -
Trre7g05281 554 MobiDBLite consensus disorder prediction 1 160 - -
Trre7g05281 554 MobiDBLite consensus disorder prediction 183 208 - -
Trre7g05281 554 CDD SEC14 272 437 IPR001251 -
Trre7g05281 554 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 267 442 IPR001251 -
Trre7g05281 554 Gene3D GOLD domain 451 548 - -
Trre7g05281 554 PANTHER PATELLIN-1 44 551 IPR044834 GO:0008289
Trre7g05281 554 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g05281 554 SMART CRAL_TRIO_N_2 228 253 IPR011074 -
Trre7g05281 554 SUPERFAMILY CRAL/TRIO N-terminal domain 80 267 IPR036273 -
Trre7g05281 554 ProSiteProfiles GOLD domain profile. 446 548 IPR009038 -
Trre7g05281 554 MobiDBLite consensus disorder prediction 34 67 - -
Trre7g05281 554 MobiDBLite consensus disorder prediction 79 125 - -
Trre7g05281 554 SUPERFAMILY CRAL/TRIO domain 277 439 IPR036865 -
Trre7g05281 554 Pfam CRAL/TRIO domain 276 436 IPR001251 -
Trre7g05281 554 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 451 547 IPR036598 -
Trre7g05281 554 Gene3D - 273 450 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05281 Trre-Chr7 59108997 59111936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05281 232 431 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 6.03e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05281 - - gmx:100788197 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05281 7 59108997 59111936 Trre7g05281 7 59108997 59111936 ECH
Trre7g05281 7 59108997 59111936 Trre5g04429 5 46313744 46316923 PCT