Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04429 ATGGCTGAGGAAGTTCCAAAAATAACAACTCAAGAGGTAGTGCCTCCTGCCGAGGAGCAAAATAAAACAGATTCCACTATTCCTGATGATAAAGAATCTGATGAGCTCAAGCCCATTCTCGAGCCCGAGAAAAAGCCCGTTGAAAACAATACTCTAGAGACTGTTACTGAGACCGATGTGTCAAAGCCTGGTGAAGATGAAAAAGTGCCTGAGTCTGGTTCGTTCAAGGAAGAGAGTACCATTGTTGGTGAGTTACCTGAAGCTGAGAAAAAAGCACTTCAAGAGCTAAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCAACAGTTTCAACTCCCAAACAAGAAAAGTCCGAACCAGAACCCGAACCTGAATCCAAACCAACAACAGAATCACAACCACCTGTTGATGACAACAAGAAAGAAGAACAGAATGAACAAGTTTCTGAAACGGAATCTGTTGTTGCTGTTACCACCGCTGATGATGACGTGTCAGCACCACCGGTGGCTGAACCTGAGGAAGCCAAAGAAGAAGAAAAGAAAGATGCTGATGTTGCTGCTGCTGCTTCTTCGGTAGATGAAGATGGAGCAAAAACGGTTGTAGCAATTGAAGAAACCGTTGTAGCTGTCTCTTCATCAATTCCAGAGTTGCCAAAGGTGGTGGAAGAACAACAACCAGAAGAGGTGTCAATTTGGGGAATACCACTCCTTTTAGACGATAGAACCGACGTTATTCTGTTGAAATTTCTCCGAGCAAGAGACTTTAAAGTGAAAGAAGCATTCACAATGATAAAGAACACAATTCGTTGGAGAAAAGAGTTCAAAATCGACGAATTATTATTCGATGAAAATTTAAGCGATGAATATTTAGAAAAAACGGTTTACATGCATGGATATGATAAAGAAGGACATCCTATTTGTTATAACATTTATGGAGAGTTTGATAACAAGGAAGTTTATAAGAAAACATTTTCTGATGAAGAGAAGAGACAAAAGTTTCTGAGATGGAGAATTCAATTTTTGGAGAAGAGTATTAGGAAATTGGATTTTAATCCTGGTGGTATATGTACTATTGTTCAGGTTAATGATCTTAAGAATTCTCCTGGTCCTACCAAATGGGAGCTTAGACAAGCTACTAAACAAGCTCTTCAATTGCTTCAGGATAATTATCCTGAATTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTAGCAGTGAACAGAATGATAAGTCCATTTCTTACACAAAGAACAAAAAGCAAGTTTGTATTTGCTGGACCATCCAAATCAGCTGAAACACTTCTAAGATACATAGCTCCGGAGCAACTTCCGGTAAAATATGGTGGACTAAGCAAAGATGGTGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACACACCGTGGAATTTCCAGTTACTGAGAATTGTTTACTATCTTGGGAGCTAAGAGTAATTGGATGGGAAGTAAGCTATGGTGCAGAGTTTGTGCCAAGTTCAGAAGGAAGCTATACTGTGATAATCCAAAAGACTAGAAAAGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAACTATAAAATTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAATTCAAGTTCTAAGAAGAAGAAGCTCTTGTATCGCTTGAAGACCAAGCCTTCAACTTCTGATTAA 1716 0.3934 MAEEVPKITTQEVVPPAEEQNKTDSTIPDDKESDELKPILEPEKKPVENNTLETVTETDVSKPGEDEKVPESGSFKEESTIVGELPEAEKKALQELKQLIQEALNKHEFSTVSTPKQEKSEPEPEPESKPTTESQPPVDDNKKEEQNEQVSETESVVAVTTADDDVSAPPVAEPEEAKEEEKKDADVAAAASSVDEDGAKTVVAIEETVVAVSSSIPELPKVVEEQQPEEVSIWGIPLLLDDRTDVILLKFLRARDFKVKEAFTMIKNTIRWRKEFKIDELLFDENLSDEYLEKTVYMHGYDKEGHPICYNIYGEFDNKEVYKKTFSDEEKRQKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIIQKTRKVASSEEPVLCNNYKIGEPGKVVLTIDNSSSKKKKLLYRLKTKPSTSD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04429 571 MobiDBLite consensus disorder prediction 59 74 - -
Trre5g04429 571 CDD SEC14 292 455 IPR001251 -
Trre5g04429 571 Gene3D GOLD domain 470 565 - -
Trre5g04429 571 SMART CRAL_TRIO_N_2 244 269 IPR011074 -
Trre5g04429 571 SUPERFAMILY CRAL/TRIO domain 294 457 IPR036865 -
Trre5g04429 571 Gene3D - 217 469 IPR036865 -
Trre5g04429 571 PRINTS Cellular retinaldehyde-binding protein signature 247 269 - -
Trre5g04429 571 PRINTS Cellular retinaldehyde-binding protein signature 412 431 - -
Trre5g04429 571 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 466 565 IPR036598 -
Trre5g04429 571 MobiDBLite consensus disorder prediction 23 50 - -
Trre5g04429 571 SUPERFAMILY CRAL/TRIO N-terminal domain 75 284 IPR036273 -
Trre5g04429 571 Pfam CRAL/TRIO, N-terminal domain 228 268 IPR011074 -
Trre5g04429 571 MobiDBLite consensus disorder prediction 136 150 - -
Trre5g04429 571 SMART sec14_4 290 457 IPR001251 -
Trre5g04429 571 MobiDBLite consensus disorder prediction 106 193 - -
Trre5g04429 571 MobiDBLite consensus disorder prediction 112 128 - -
Trre5g04429 571 MobiDBLite consensus disorder prediction 171 190 - -
Trre5g04429 571 MobiDBLite consensus disorder prediction 1 87 - -
Trre5g04429 571 ProSiteProfiles GOLD domain profile. 464 565 IPR009038 -
Trre5g04429 571 Pfam CRAL/TRIO domain 295 454 IPR001251 -
Trre5g04429 571 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 284 460 IPR001251 -
Trre5g04429 571 PANTHER PATELLIN-1 42 568 IPR044834 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04429 Trre-Chr5 46313744 46316923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04429 248 449 Acyl Lipid Metabolism Gene Families AT1G55840 28.972 9.40e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04429 - - gmx:100805585 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04429 5 46313744 46316923 Trre5g04429 5 46313744 46316923 ECH
Trre7g05281 7 59108997 59111936 Trre5g04429 5 46313744 46316923 PCT