Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05278 ATGGCTGCTGAGCTAGTCAATGCTGCAACAAGTGAGAAACTGTCTGAAATTGATTGGATGAAAAATATTGAAATCTCTGAATTAGTTGCTCGTGATCAAAGGAAAGCTAAAGATGTTGTTAAAGCTATAAAAAAGAGACTTGGTAACAAGAACCCTAATACTCAACTTTATGCTGTCATGTTGCTGGAAATGTTGATGAACAACATAGGAGATCCTATTCATGAGCAGGTGGTTGATGCAGAAATTATTCCTATTTTTGTGAAAATTGTAAAGAAAAAGTCAGATTTGCCTGTCAGGGAGCGAATATTTCTCCTACTAGATGCAACACAAACATCTCTTGGTGGAGCTTCTGGAAAGTTTCCGCAGTATTATAAAGCATATTATGATTTAGTGAGTGCCGGGGTGCAATTTCCTCAAAGAGCTCAAATTGTCCAATCAAATCATCCTAGTTCACAACCAAATAAGACTAATAATGTACCGAAAAGGGAGCAGATCCCACTTAGACATGGAGGGGTTCCTCAAAAAGAAGAATCCAACACTGTTCCTGAATCTAGCATTATCCAGAAGGCCAGTAATGTGTTGGAAATTCTAAAAGAAGTCCTTGATGCTGTTGATGCCAAAAATCCTCAGGGAGCAAGCGATGAATTCACCCTTGACCTTGTTGAGCAATGTTCATTTCAAAAGCAGAGGGTAATGCATCTTGTGATGGCTTCTCGAGACGAGAGGACAGTTTCCCGAGCAATAGAATTGAATGAGCAGCTTCAGAAAGTTCTTGAGAGACATGATGACCTTCTTTCTACCAAAGTTACAACAACTGTGAATCACTTGGACCGTGAAGAAGCAGTGGAGGAAGAAGAACCCGAACAGTTATTCAGAAGATTACGCAAAGGAAAAGCTTGTGTGAGGCCTGAAGACGAAGTAACTGAACCTCAGTTCCCTCAATTGAGTTTGCTTGAAGAGAGACTCAACCGTCCACTAATAAGACCACTCTCTATGGAACCATCTCAAGAAGCTAATGCTCGCCCTGCACCTGCTGTAGTTCCGCCCCTAAGTTCAAAACACAGTGAGGAGCTTCCTCCAGTTGCAATTCCACCGCCACCTTCAAAGCACATCGAGAGAGAAAGATTTTTTCAGCATAATAAGGACAGTGGCACTTTGGCTGGCCACATCAGAGGCCTTTCTTTACATAGTCGTAATGGCAGCAGCTCGCAGAGTGGAAGCTTTGATTTTAGCGAGTGA 1239 0.4189 MAAELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNTQLYAVMLLEMLMNNIGDPIHEQVVDAEIIPIFVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYKAYYDLVSAGVQFPQRAQIVQSNHPSSQPNKTNNVPKREQIPLRHGGVPQKEESNTVPESSIIQKASNVLEILKEVLDAVDAKNPQGASDEFTLDLVEQCSFQKQRVMHLVMASRDERTVSRAIELNEQLQKVLERHDDLLSTKVTTTVNHLDREEAVEEEEPEQLFRRLRKGKACVRPEDEVTEPQFPQLSLLEERLNRPLIRPLSMEPSQEANARPAPAVVPPLSSKHSEELPPVAIPPPPSKHIERERFFQHNKDSGTLAGHIRGLSLHSRNGSSSQSGSFDFSE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05278 412 Gene3D - 178 274 IPR038425 -
Trre7g05278 412 Pfam GAT domain 193 265 IPR004152 GO:0035091|GO:0043130
Trre7g05278 412 MobiDBLite consensus disorder prediction 333 412 - -
Trre7g05278 412 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Trre7g05278 412 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Trre7g05278 412 Coils Coil 187 207 - -
Trre7g05278 412 Coils Coil 247 267 - -
Trre7g05278 412 PANTHER TOM1-LIKE PROTEIN 1 314 IPR044836 GO:0035091|GO:0043130|GO:0043328
Trre7g05278 412 CDD GAT_GGA-like_plant 186 264 - -
Trre7g05278 412 CDD VHS 2 130 - -
Trre7g05278 412 Gene3D - 2 136 IPR008942 -
Trre7g05278 412 Pfam VHS domain 5 112 IPR002014 GO:0035091|GO:0043130
Trre7g05278 412 SUPERFAMILY ENTH/VHS domain 4 140 IPR008942 -
Trre7g05278 412 MobiDBLite consensus disorder prediction 144 161 - -
Trre7g05278 412 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Trre7g05278 412 MobiDBLite consensus disorder prediction 144 183 - -
Trre7g05278 412 MobiDBLite consensus disorder prediction 395 412 - -
Trre7g05278 412 SUPERFAMILY GAT-like domain 144 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05278 Trre-Chr7 59084774 59089044 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05278 - - gmx:100802949 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05278 7 59084774 59089044 Trre7g05278 7 59084774 59089044 ECH
Trre7g05278 7 59084774 59089044 Trre5g04425 5 46272076 46277485 PCT