Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04425 ATGGCAGCTGAGTTAGTCAATGCTGCAACAAGCGAGAAATTGGCTGAAACTGATTGGGCAAAAAATATTGAAATATGTGAGTTGGTTGCACATGATAAAAGGCAAGCTAGAGATGTTGTTAAAGCTATCAAGAAGAAACTCGGCAGCAAACACTCCAATACTCAACTTTATGCTGTCACGTTGCTGGAGATGTTGATGAACAATACTGGAGAGCATATTCATGAGCAGGTGATTGATGTCGGAGTTATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCTGATCTGCCTGTGAGGGAGAGGATATTTCTCCTACTAGATGCTACACAATCATCCCTCGGTGGTGCTTCTGGAAAATTTCCTCAGTATTATAATGCATATTATGATTTGGTGAATGCTGGAGTGCAGTTTCCTCAAAGTGCTCAAGTGGTTCAATCAAATCATGCTAGTTCACAACCTAGTAGGACCGGTAGTGTACCAAACAGGGAGCAGGCCGCACCTAGACATGAAGCGGTTGTACCGCAAACAGAGTCCCAGACAGTTCCCGAATCTAGCATCATTCAAAAGGCTGGTAATGCATTGGAAGTTTTAAATGAAGTCCTTGATGCTGTTGATGCTCAAAATCCTCAGGGAGCAAATGATGAATTCACCCTTGACCTTGTAGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGGCTTCTCGAGATGAGAGGATAGTTTCTCGAGCAATTGAATTGAACGAACAGCTTCAGAAAGTTCTTGCAAGACATGAAGACCTTGTTTCTGGAAGAGCTACAAAGCCTGCTAATGAACATGTTCCGAAAGTTATACCAAGACGCCATGACGTTGTATCTGGCAGAGCTACAACAACTGCGAATGAACAGTTTCCGAAAGTTCAACCAAGATGCGATGACGCTGTATCTGTCAGAGCTACAACAACTGCTAACGAACAGTTTCCAAAAGTACTTCCAAGACGCAATGATGTTGTATCTGGCAGAGCTACAACAACTGCTATTACTCGTTTTGACCATGATGAATCAGAGGAGGAAGAGGAACCTGAACAGTTAGTACGAAGATTACGCAAAGGGAAGGCTTGTGCAATGCCTGAAGACGAAGAAACTGAAACCGACATCTCTCGCATGCGTTTGAATGGGGAAAGACTCAATCGTCCCTTAATACGGCCACTGTCCGTTGAGCCATCTCGAGAAGTTCACATTCCTGGTCCTCAACCGCCTTTAATCCCACCTCCACGTCCGAAACAGAATGGGGAGCTTCCTCCCGTGGCAATTCCACCGCCACCTGCAAAACACATGGAGAGGGAGAGATTTTTTCAGGAAAACAAGGATGCTTCTAATGTGTCTGGCCACATGAGAGGTCTCTCTTTACATAGTCGTAACAGCTCTCACAGTGGAAGTTTTGATTTTAGCGACTGA 1446 0.4385 MAAELVNAATSEKLAETDWAKNIEICELVAHDKRQARDVVKAIKKKLGSKHSNTQLYAVTLLEMLMNNTGEHIHEQVIDVGVIPILVKIVKKKSDLPVRERIFLLLDATQSSLGGASGKFPQYYNAYYDLVNAGVQFPQSAQVVQSNHASSQPSRTGSVPNREQAAPRHEAVVPQTESQTVPESSIIQKAGNALEVLNEVLDAVDAQNPQGANDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHEDLVSGRATKPANEHVPKVIPRRHDVVSGRATTTANEQFPKVQPRCDDAVSVRATTTANEQFPKVLPRRNDVVSGRATTTAITRFDHDESEEEEEPEQLVRRLRKGKACAMPEDEETETDISRMRLNGERLNRPLIRPLSVEPSREVHIPGPQPPLIPPPRPKQNGELPPVAIPPPPAKHMERERFFQENKDASNVSGHMRGLSLHSRNSSHSGSFDFSD 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04425 481 MobiDBLite consensus disorder prediction 452 481 - -
Trre5g04425 481 Pfam VHS domain 5 109 IPR002014 GO:0035091|GO:0043130
Trre5g04425 481 Gene3D - 176 274 IPR038425 -
Trre5g04425 481 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
Trre5g04425 481 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Trre5g04425 481 MobiDBLite consensus disorder prediction 409 438 - -
Trre5g04425 481 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Trre5g04425 481 Gene3D - 2 136 IPR008942 -
Trre5g04425 481 MobiDBLite consensus disorder prediction 404 481 - -
Trre5g04425 481 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Trre5g04425 481 PANTHER TOM1-LIKE PROTEIN 1 468 IPR044836 GO:0035091|GO:0043130|GO:0043328
Trre5g04425 481 CDD VHS 2 130 - -
Trre5g04425 481 CDD GAT_GGA-like_plant 186 264 - -
Trre5g04425 481 Coils Coil 244 264 - -
Trre5g04425 481 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Trre5g04425 481 MobiDBLite consensus disorder prediction 144 161 - -
Trre5g04425 481 MobiDBLite consensus disorder prediction 144 183 - -
Trre5g04425 481 SUPERFAMILY GAT-like domain 144 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04425 Trre-Chr5 46272076 46277485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04425 - - mtr:25489880 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04425 5 46272076 46277485 Trre5g04425 5 46272076 46277485 ECH
Trre7g05278 7 59084774 59089044 Trre5g04425 5 46272076 46277485 PCT