Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05171 ATGCTGAGTTCTGATGATGATGGAGATATTGATGTATTCTATGACTCATTGGATAGTTTGTTAGGTCAAGATTCTGTTTTAGCCGAATTAGAGGTTGGTTTTGAAAGGCTTCGTTGTGATGATTATGATTATGATAAAATTTGGGTGAATGAGCCTGTTAGTGTGAAGGAAAGAAGGCAACGTTTTCTGCAGGGTATGTGTTTAGTCGATAGTTTTTCGAAGGTTTGTTTACAAGAGAGAATGATGAGTTTTGGTGACTCATCGATCACCTCGAGGATGGAGAGGGTCACGGAGTGCAGTGGAGCAGTCTCAAATGTATGCATTTCTCCTTCTGGTGAAGTATCTGAGAAGGTTGTTTTATCTGGATGGAATTCAGCTTCCGAAGCTGATGTCTTGTTCAAAGAAATTAAAGGGCGTCGCGAGGTTGAAGTGGATGCAAGTTTTCACGAGTATAGCCAGAGAGAAGGTGAGGCAGAAGAAGAATTTCGGCATTTAGATAAGGTTGAAACTAATAGGAAAATTTGGTGGAAGCGCTTTGTTAACATAAGGAAAAGCGACGAAGGAAAAGTTAGACCGAAATTGAATACAGCGACAAATAAAACTCGTAGAGTAAAAGTACGACAGAATAAAAAGAGGTGGCTTGAGTTCAACGAGCTATACATTGGACAAGAGATTAAAGCTCATAAAGGATTAATCTGGACTATGAAATTCAGTCCTAATGGTAAATATTTAGCTAGTGGAGGTGAAGATGGCGTTGTGCGCATATGGCGCATTATGTCATCTGACAAAAGCTCGTCTTTTATTTTCATTCAAAATGATATTTTTCAAATTGACGAATCACCGCTGCAAGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCTTGGTCTAATTCAGATATTCTTCTCTCGTCTTCTATGGATAAAACCGTCTGCTGTTGGAAAATCGGCTGCGATCAATGTCTTAGTGTTTTCCCTCACAAAGACTATGTGACGTGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGATCGATAGATGGTAAAGTTCGAATATGGGGGATACGTGAAGAGCGTGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAACAAGACGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACGTGCCGTTTTTATGTCGCATCAGGAAAATATTTCAAGTTTGAGGCACAGATAGGTATCTATGGAAAGAAGAAAGCGTCGGGCAACAAGATTACTGGCATTCAGTTCTTTCAAAACAACAGTCAGAGAATTATGATCACATCAGAAGATTCCAAAATTCACATATTGGATGGAATTGAGATTGTTCAGAAATACAAAGGCCTTCCGCGATCAGGAAGTCAGATGTCTGGTTCGTTTACATCAAATGGGAAACATATAATTTCAGTTGGAGAGGACTCGCACGTGTATATATGGAACTTCAACGACACCGAAAGCGTGAAAGCAGAAGATAGAAGTGACGATAGAAATAACTTATCTCACCATTCTTCAGAAACGAAAACCAAGCTAGAGTTTGGTTCTGAGGTTAGAGATATAGAACAACGTTTTTCTCTCGGTAATTGGTTCTTCATCGATGGTACATGTCGAGGTTCTATGACATGGCCCGAAGAGAAACTTCCAACATGGGATTTACCTCTTGTTGAAGATGAATACGATCGTCAAAAAATATGTCGCGAAGATAGTAGCCACGACAGCAGGAATATATCAGAAACATGGGGTCTAACAATAGTGGCTGCTGGTAGTGATGGAACTATCAAGACATTCCACAATTTTGGTTTGCCTGTTAGGCTTTAG 1851 0.3971 MLSSDDDGDIDVFYDSLDSLLGQDSVLAELEVGFERLRCDDYDYDKIWVNEPVSVKERRQRFLQGMCLVDSFSKVCLQERMMSFGDSSITSRMERVTECSGAVSNVCISPSGEVSEKVVLSGWNSASEADVLFKEIKGRREVEVDASFHEYSQREGEAEEEFRHLDKVETNRKIWWKRFVNIRKSDEGKVRPKLNTATNKTRRVKVRQNKKRWLEFNELYIGQEIKAHKGLIWTMKFSPNGKYLASGGEDGVVRIWRIMSSDKSSSFIFIQNDIFQIDESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVCCWKIGCDQCLSVFPHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCRFYVASGKYFKFEAQIGIYGKKKASGNKITGIQFFQNNSQRIMITSEDSKIHILDGIEIVQKYKGLPRSGSQMSGSFTSNGKHIISVGEDSHVYIWNFNDTESVKAEDRSDDRNNLSHHSSETKTKLEFGSEVRDIEQRFSLGNWFFIDGTCRGSMTWPEEKLPTWDLPLVEDEYDRQKICREDSSHDSRNISETWGLTIVAAGSDGTIKTFHNFGLPVRL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05171 616 PANTHER WD REPEAT DOMAIN 44 264 613 IPR040324 -
Trre7g05171 616 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Trre7g05171 616 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Trre7g05171 616 PRINTS G protein beta WD-40 repeat signature 303 317 IPR020472 -
Trre7g05171 616 SMART WD40_4 410 450 IPR001680 GO:0005515
Trre7g05171 616 SMART WD40_4 278 316 IPR001680 GO:0005515
Trre7g05171 616 SMART WD40_4 319 358 IPR001680 GO:0005515
Trre7g05171 616 SMART WD40_4 451 492 IPR001680 GO:0005515
Trre7g05171 616 SMART WD40_4 218 257 IPR001680 GO:0005515
Trre7g05171 616 SMART WD40_4 360 399 IPR001680 GO:0005515
Trre7g05171 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 360 - -
Trre7g05171 616 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 258 - -
Trre7g05171 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Trre7g05171 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 317 IPR001680 GO:0005515
Trre7g05171 616 Gene3D - 215 524 IPR015943 GO:0005515
Trre7g05171 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Trre7g05171 616 Pfam WD domain, G-beta repeat 321 357 IPR001680 GO:0005515
Trre7g05171 616 Pfam WD domain, G-beta repeat 280 316 IPR001680 GO:0005515
Trre7g05171 616 Pfam WD domain, G-beta repeat 224 256 IPR001680 GO:0005515
Trre7g05171 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 501 IPR001680 GO:0005515
Trre7g05171 616 SUPERFAMILY WD40 repeat-like 219 606 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05171 Trre-Chr7 58304936 58307450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05171 220 389 Miscellaneous Gene Families AT5G08390 24.138 3.68e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05171 K20241 - gmx:100819135 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05171 7 58304936 58307450 Trre7g05171 7 58304936 58307450 ECH
Trre7g05171 7 58304936 58307450 Trre5g04275 5 44764554 44767138 PCT