Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04275 ATGCTGATGATCTCTGATGAAGGAGATAATGATGTGTTCTTTGACTCATTCGATTGTTTGTCGTGGTCGTCGCCTCCTCGAGAATCTCTTTTGACAAAACAAGATTTTGGGTATGAGATTTGGTTGAATGAGCCTCTTAGTGTGAAGGAAAGAAAGGAAAAATTTCTTCAAGAGATGGGTTTTGTTCATGATTCTTCCAAGTTTTGTGAGGAGATGATCATGGATTGCGGTCGAGCGGAATCGAATGGTTGCATTTTGGATTCGGGAAATGAAGCCACTTCCGAGGTACAAGTCTTGTTTGATCCCAAAGACGATGATGATAAACTAGAAGCAAGTGTTGATGGAACGGAACATGAGCTAAGAAATAGAGAAGCTGAGATTCCAGAAGAATTTCATGCTGTTGATATTGGTAAGAATAAAAAGAAAAAATGGTGGAAGCAATTTGTAAACAGTGGGAAACTAGCTGGAGTGAAAGTTAGATCAAAATTTAGTAATGCGAGTACGAATAAAACTCATCGAATCAATGTAAGACACAATAAGAAAAGATGGAATGAGTTCAGTGCTGTGTATATTGGACAAGAGATTAGAGCACACAAAGGTTTAATTTGGACTATGAAATTTAGTCCTAATGGTCAGTATCTAGCTACTGGAGGTGAAGATGGTGTTGTTCGTATATGGCGTGTTTCGTCGCTGAATGCTTCGAGTATTTGCTTTGCTAAAGAAGACAGCGCTGTTAGCAAATTGAAACATGACTTGTCTTTTTCTCCGAAGAAATGCTCGAGTCAATCTCCTGCTGTTCTTCCAAGTAAGATTCTCAAAATTGAAGAATCCCCTCTGCAAGAACTGTTTGGTCATACGAGTGATGTGATGGATTTGGCTTGGTCCGATTCAGATATGCTCCTTTCCTCGTCAATGGATAAAACAGTCCGCATGTGGAAAGTTGGTTGCAATCGATGTTTGAAAGTTTTCCATCACAAAGATTATGTGACATGCATTCAATTCAACCCGGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTCCGAATATGGGGCGTACAGGAAGAACGAGTTGTTGACTGGGCAGACATAGGAGATGTCATAAGTGCTATAAGTTACCAGCCGGATGGGAAGGGGTTTGTAGTTGGTTCCCTTTCTGGTACTTGCCGATTTTATGTTGCCTCAGGTAAACAATTCCAGCTTGAGGCGAAGATTCGTGTCAATGAAAAGAAGAAGAGATCAGCTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGAAAAACCATCAGAGAGTTATGATCACATCACGAGATTCCAAAGTTAGAATATTGGAAGGCGTTGAACTTGTTAAGACATATAAAGCCCTTCCAATGTCAGGAAGTCAGATGTCAGGTTCATTTACATCGAATGGAAAACACATAATTTCAGTCGGAGAGGACTCTCGTGTGTATATTTGGAACTTCAATGACTCGGGAAACTATTTTTCCAAACAGAGAAAAACCGAGAGTTCTTGCGAGTACTTTCGCTCTAAGGGGGTTACCGTTGCAATACCTTGGTCAGGAATGACTGCAGAAACAGGCTGCACTCTCAGCGATTTTTCCAACTATTCTTCCGTAAAGCACCGCCAATGCGTTAGAGAGTCGGAACGTTTTTCTTTTGGTAGTTGGTTCTCCATTGATGGTTCGTGCCGAGGTTCTATGACATGGCCTGAAGAGAAACTTCCCAGTTGGGATTCACCTCTTTCCGAAGCTGAATTTGAAGACGAGGAGCTATGTCTTAACGATCTATACCATGACAATTGTGTACCAGAAACATGGGGACTATCCGTTGTTGCAGCTGGTCTTGACGGAACCATCAAGACATTTCACAACTTCGGATTTCCTGTTAGGATATAA 1905 0.4115 MLMISDEGDNDVFFDSFDCLSWSSPPRESLLTKQDFGYEIWLNEPLSVKERKEKFLQEMGFVHDSSKFCEEMIMDCGRAESNGCILDSGNEATSEVQVLFDPKDDDDKLEASVDGTEHELRNREAEIPEEFHAVDIGKNKKKKWWKQFVNSGKLAGVKVRSKFSNASTNKTHRINVRHNKKRWNEFSAVYIGQEIRAHKGLIWTMKFSPNGQYLATGGEDGVVRIWRVSSLNASSICFAKEDSAVSKLKHDLSFSPKKCSSQSPAVLPSKILKIEESPLQELFGHTSDVMDLAWSDSDMLLSSSMDKTVRMWKVGCNRCLKVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGVQEERVVDWADIGDVISAISYQPDGKGFVVGSLSGTCRFYVASGKQFQLEAKIRVNEKKKRSAGNKITGIQFSQKNHQRVMITSRDSKVRILEGVELVKTYKALPMSGSQMSGSFTSNGKHIISVGEDSRVYIWNFNDSGNYFSKQRKTESSCEYFRSKGVTVAIPWSGMTAETGCTLSDFSNYSSVKHRQCVRESERFSFGSWFSIDGSCRGSMTWPEEKLPSWDSPLSEAEFEDEELCLNDLYHDNCVPETWGLSVVAAGLDGTIKTFHNFGFPVRI 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04275 634 SMART WD40_4 316 355 IPR001680 GO:0005515
Trre5g04275 634 SMART WD40_4 357 396 IPR001680 GO:0005515
Trre5g04275 634 SMART WD40_4 449 490 IPR001680 GO:0005515
Trre5g04275 634 SMART WD40_4 401 448 IPR001680 GO:0005515
Trre5g04275 634 SMART WD40_4 188 227 IPR001680 GO:0005515
Trre5g04275 634 SMART WD40_4 275 313 IPR001680 GO:0005515
Trre5g04275 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 357 - -
Trre5g04275 634 PANTHER WD REPEAT DOMAIN 44 135 631 IPR040324 -
Trre5g04275 634 SUPERFAMILY WD40 repeat-like 193 493 IPR036322 GO:0005515
Trre5g04275 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 230 - -
Trre5g04275 634 FunFam WD repeat-containing protein 44 179 522 - -
Trre5g04275 634 PRINTS G protein beta WD-40 repeat signature 214 228 IPR020472 -
Trre5g04275 634 PRINTS G protein beta WD-40 repeat signature 300 314 IPR020472 -
Trre5g04275 634 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Trre5g04275 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 322 IPR001680 GO:0005515
Trre5g04275 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 314 - -
Trre5g04275 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 364 IPR001680 GO:0005515
Trre5g04275 634 Pfam WD domain, G-beta repeat 277 313 IPR001680 GO:0005515
Trre5g04275 634 Pfam WD domain, G-beta repeat 318 354 IPR001680 GO:0005515
Trre5g04275 634 Pfam WD domain, G-beta repeat 194 226 IPR001680 GO:0005515
Trre5g04275 634 Gene3D - 180 518 IPR015943 GO:0005515
Trre5g04275 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 236 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04275 Trre-Chr5 44764554 44767138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04275 189 395 Miscellaneous Gene Families AT5G08390 22.642 2.58e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04275 K20241 - gmx:100780979 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04275 5 44764554 44767138 Trre5g04275 5 44764554 44767138 ECH
Trre7g05171 7 58304936 58307450 Trre5g04275 5 44764554 44767138 PCT