Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04973 ATGGGAGGTCGCGGGAAGTCACGAACTCAACGAAAACACTTTCGTCAAAACAGAGAAAACGTTTGGAAGCGTTCAAAACCAGATCCAGATCCTTCCTTATCTTCCGATAAATCTCAAACTACTCATTGGACTCCTTTCTCTACTGAAAACCCTTCCTTCGATTCCTATTACAAGCAACAGTTAATTGTTGATCCACAAGAGTGGGATCAATTCGTCGCAATTCTCAGAACTCCATTGCCTGCATCATTCAGAATCAATGCTAGTAGTCAATTTGCTGATGATATTCGTTCTCAATTGGAAAATGATTTTGTGCATTCTCTTCGTGCCGAGATTGCTGAAGGTGGCGAGACAGAGGCTATTCGGCCTTTGCCTTGGTATCCGGGGAACTTTGCTTGGCATTCGAATTTTTCGAGGATGCAGCTTAGGAAGAATCAAACTCTAGAGAGGTTCCACGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTATTCTTGGATGTGCATTCAGACCATATTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTCGAGATTATACACCAATCAACAAAAGCAGGATCACTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTCAAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACCAATCACGAAGCACAGCATTTCCCAGGATGCCGTTTAAAAGGAAATTCTGCGAGAATGAAGTTAGATCACAATATTCACCAACTGTTATTTGACCGTGTTCTGTGTGATGTCCCATGTAGTGGAGATGGTACACTTCGTAAGGCACCTGACATGTGGAGGAAATGGAATTCAGGGATGGGACAAGCGCTTCACAGCCTACAGGTTTTAATTGCTATGCGAGGTTTATCTTTACTCAAAATTGGTGGAAGAATGGTCTATTCAACATGCTCAATGAATCCTATTGAAAACGAAGCTGTCGTTGCAGAGATTTTGCGGAGGTGCGGCGAGTCTGTAAAACTTGTTGATGTGTCTAGTGAGCTTCCACAACTTATTCGCCGGCCAGGTCTCAAGAGCTGGAAGGTATATGACAAGAGCAGGTGGTTTGTCTCTTCCAAAGATGTTCCCAAGTTTCGTAGAAGTGTAGTTCTTTCCAGTATGTTTCCTTCTGGCAAAGGCTATCAGGATCTTGGTGATAGTAGTTGTGATGTTGACATGGAAGATGACATTACTAGTGTGGAAAATGGAAAAGCTGAAGATGGCGTTGAAGCAGTAGACATTCCTGCGGTGTCCGAGTCTGCCGAGGAAGTTTCGGAATTTCCTCTAGAGCATTGCATGAGGATAATGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTGCTGCAAAAAGTTTCTCCTCTACCAGCTGTTAATGAAAAACCTAGCAAACAAATTGATGAGCAATATGTAGAACCACCAAACCAGAGTCTTGTGGATGCACAAGCACCTCAGATCAATTCATCTGAAAGTAAACTTGAAGAAGTCTTAGAAGCAGTTCCAGAGGAAAATGCGAATGACAATGTATCTAATACAGAAGATTTGGAAGTTAGTCCTCTTACATGTGAAGAACATAATTCTGAGGAAACCGAAGAGCCACCTAAAGCAGAAAACACGGAAAAGAAGTTTCCGAGCAAAAGAAAGCTACAAATTCAAGGCCAATGGAGAGGTGTTGACCCTGTTGTCTTTTTTAAAGATGAAGCAATTATTAATAGTATAAGGACTTTTTATGGAATCGATGAGCGTTTTCCATTAAATGGTCACCTTATTACACGAAACAGTGATACGAGTCATGTCAAAAGAATTTACTATGTCTCCAACTTTGTCAAGGATATTCTTGAGTTGAACTTCTCAGTTGGCCAGCAACTGAAAATAACCTCAGTTGGCATGAAAATGTTTGAAAGACAAACAGCACGAGAAGGCAGTTCTTCACCATGTGCTTTCCGGATCTCATCCGAAGGATTGCCCCTTATTCTTCCATACATAACAAAGCAAATTATACAGGCATCTCCTGTGGACTTCAGGCGTCTTCTGCAGGACAAAGATGTAAAATATACAGATTTTGCTGATGCCGAGTTTGGTGAAAAGGCAGCTAACTTATTGCCTGGCTGTTGTGTGGTTATTCTGGGTAAAGGGAACACAGTTGCTACAGAGTCCCTCAAAGTTGATGAGTCAACAATAGCCATCGGATGCTGGAGGGGTAGAGCGAGGTTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAAATGCTTGAAAGGCTTTTAATACGTCTAGGCACAGAAAATGGCTCTTCTGAGTGTGTGGACAAATCCTCTAATGATGTGGGAGGTGAAGAACAACCAGTACAGGAGTTGAATGCTGATGATGTGAAAGCTACTGTTAGTTAG 2481 0.4188 MGGRGKSRTQRKHFRQNRENVWKRSKPDPDPSLSSDKSQTTHWTPFSTENPSFDSYYKQQLIVDPQEWDQFVAILRTPLPASFRINASSQFADDIRSQLENDFVHSLRAEIAEGGETEAIRPLPWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHIVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLKGNSARMKLDHNIHQLLFDRVLCDVPCSGDGTLRKAPDMWRKWNSGMGQALHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEILRRCGESVKLVDVSSELPQLIRRPGLKSWKVYDKSRWFVSSKDVPKFRRSVVLSSMFPSGKGYQDLGDSSCDVDMEDDITSVENGKAEDGVEAVDIPAVSESAEEVSEFPLEHCMRIMPHDQNTGAFFIAVLQKVSPLPAVNEKPSKQIDEQYVEPPNQSLVDAQAPQINSSESKLEEVLEAVPEENANDNVSNTEDLEVSPLTCEEHNSEETEEPPKAENTEKKFPSKRKLQIQGQWRGVDPVVFFKDEAIINSIRTFYGIDERFPLNGHLITRNSDTSHVKRIYYVSNFVKDILELNFSVGQQLKITSVGMKMFERQTAREGSSSPCAFRISSEGLPLILPYITKQIIQASPVDFRRLLQDKDVKYTDFADAEFGEKAANLLPGCCVVILGKGNTVATESLKVDESTIAIGCWRGRARLSVMVTAMDCQEMLERLLIRLGTENGSSECVDKSSNDVGGEEQPVQELNADDVKATVS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04973 826 Gene3D Vaccinia Virus protein VP39 47 391 IPR029063 -
Trre7g04973 826 MobiDBLite consensus disorder prediction 795 810 - -
Trre7g04973 826 MobiDBLite consensus disorder prediction 14 31 - -
Trre7g04973 826 MobiDBLite consensus disorder prediction 1 47 - -
Trre7g04973 826 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Trre7g04973 826 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 360 379 IPR023270 GO:0016428
Trre7g04973 826 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 654 666 IPR023270 GO:0016428
Trre7g04973 826 Pfam 16S rRNA methyltransferase RsmB/F 176 361 IPR001678 GO:0008168
Trre7g04973 826 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 483 IPR029063 -
Trre7g04973 826 MobiDBLite consensus disorder prediction 32 47 - -
Trre7g04973 826 ProSitePatterns NOL1/NOP2/sun family signature. 275 286 IPR018314 GO:0003723|GO:0008168
Trre7g04973 826 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 483 IPR001678 GO:0008168
Trre7g04973 826 MobiDBLite consensus disorder prediction 549 577 - -
Trre7g04973 826 PRINTS RNA (C5-cytosine) methyltransferase signature 186 196 IPR023267 GO:0001510
Trre7g04973 826 PRINTS RNA (C5-cytosine) methyltransferase signature 326 342 IPR023267 GO:0001510
Trre7g04973 826 PRINTS RNA (C5-cytosine) methyltransferase signature 276 288 IPR023267 GO:0001510
Trre7g04973 826 PRINTS RNA (C5-cytosine) methyltransferase signature 465 482 IPR023267 GO:0001510
Trre7g04973 826 MobiDBLite consensus disorder prediction 794 826 - -
Trre7g04973 826 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 48 390 - -
Trre7g04973 826 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 795 IPR023267 GO:0001510
Trre7g04973 826 MobiDBLite consensus disorder prediction 532 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04973 Trre-Chr7 56764173 56769704 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04973 K15334 - gmx:100808859 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04973 7 56764173 56769704 Trre7g04973 7 56764173 56769704 ECH
Trre7g04973 7 56764173 56769704 Trre5g03311 5 29693161 29700345 PCT