LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g03311	ATGGGGAGAGGAAGAGGGAAGAGCCGTACACAGAGAAAACATTTCCAGCAAAACAGAGAGAACGTTTGGAAGCCACAACCTCGTCCAGAATCACTTCCTTCTTCCACAAATCTTTTCCATATTCAAAACGCTGATTTCGATCACTATTACAAGGAGCAAAACATCGTGTCACCAGAAGAATGGGATTCATTCATGCAAGTTCTAAGAACTCCGTTACCTGCAGCATTTAGAATCAATTCCAGTAGCCTTTTTCATGCTGATATTCGGTCCCAACTGGAAAATGACTTTGCACCCGATCTTCAGTCCATGGTTGATGAAGGGGATGAGGAGGATGCTATTAAGCCTTTGCCATGGTATCCGGATAATTTTGCTTGGCATTCTAATTTTTCCCGTATGCAGCTCAGGAAGAATCAAGCACTTAAGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACGAGACAGGAAGCTGTCAGCATGGTGCCTCCTCTGTTCTTAGATGTACATTCGAATCATATTGTACTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTTTACACCAATCAACTAAAGCAGGATCACTGCCCGATGGAATGGTTATAGCAAATGATCTAGATGTACAAAGATGTAATCTTCTCATCCACCAAATAAAACGAATGTGCACAGCAAACCTAATTGTCACCAACCATGAAGCTCAGCACTTCCCGAGATGTCATTTGAAAATGGATTGTGATACAGTGGGTCCAGATCACTGTGCTTCCCAACTGCTATTTGATCGTGTTCTGTGTGACGTGCCATGCAGTGGAGATGGTACCCTCCGCAAGGCACCCGATCTCTGGAGGAGATGGAACACAGGGACCGGAAATGGGCTTCACAACCTACAAATTGCAGTTGCCATGCGAGGCCTATCTTTACTTAAAGTTGGTGGAAGAATGGTTTATTCAACCTGCTCGATCAATCCTATTGAAAATGAAGCTGTTGTGGCAGAGGTTTTGCGGAGGTGTGAAGGGGCTATTGAACTTGTTGATGTCTCCAGTGAGCTTCCCCAACTTATTCGTCGGCAAGGTCTGAAAAGATGGAAGGTGTGTGACAAGGGTAAGTCCTTGGTTTCCTGTAAAGAGGTTCCCAAGGTTCGTAGAAGTGTAGTTCTTCCCAGCATGTTTCCAAATGGCGGAAGCTATCGAGATATTGACTGTAATGGTAATTGTGATGTTAACGGACATTCTAAAGATGGTGTTCAAACAGTGGAGAATCCTGTAATGCATGAGTTTGCTGAGGAAGTTTCTGATTTTCCACTAGAGCGATGCATGCGGTTACTGCCCCATGATCAGAACTCTGGAGCCTTCTTTATAGCTGTATTGCAAAAAAAATCTCCCCTGCCAGCAATTGTGGTAAAAACTAGAAAAGAAGTTAATAATCAACACATAGAATCAGTGAACCAGGGCAATGAAGATGCACAAGTATTGCAGGTTAATCCATCAGAAAGTACACACGAAGAAGTTTGTGAACAAGAGTTCGAGGATAATAAAAATGAACCCAACACTGCAGTTTTTAAATTTAGTCCTGTTATAGATGAAGAAAGTGATTCCAAGGAAGCCCAGGAGCCCCACACTGTAGAAAACATAGCAAATGTCACTCCAAGCAAAAGGAAGCTTCAGAAACAAGGCAAATGGAAAGGTGTTGACCCTGTTGTCTTCTTCAAAGAGGAAGCAATTATTAAGAGTATAAAGGCATTCTATGGTATTGACGAACAGTTCCCATTAGATGGTCACCTTGTAACAAGGAACAGTGATACAAGTAATGTAAAAAGAATTTACTACATCTCCAAGTCAGTCAAGAATGTTCTTGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATAACATGTGTTGGCTTGAAAGTATTTGAAAGACAAAAGTCACGGGAAGGTAGATCTGTAGAATGTGCTTTCCGAATCACTTCTGAAGGATTGCCTCTTATCCTCCCTCACATCACCAAACAGATCCTAAGCGCATCTCCTATAGATTTCAAGCATCTTCTCCAGTATAAAAATATAAAATTTGCAGATTTTGTCGATGCCAAATTTGGTGAAAAGGCAGCAAACTTAATGCCAGGCTGTTGCGTGGTAGTTCTGGGTGAAGGAAACAAAACCGTCGCAGAGGCCCTCCAAGTGGATGAATCATCAATAGCCATTGTATGCTGGAAAGGTGGTGCAAGTTTGACTGTAATGGTTACCTCAATAGAATGCCAAGAACTGCTTGAAAGGCTTTTAATGCGTTCAGACATGGTAAGAGAAAAGGGATCCTCCATGCAGGAAGAGGAGCGATCTAATTACGCCGAAGATGTAGAACAGGAGTCAAACTGTAACAGCCAAGGCGTGGATGCTGCTTGA	2424	0.4212	MGRGRGKSRTQRKHFQQNRENVWKPQPRPESLPSSTNLFHIQNADFDHYYKEQNIVSPEEWDSFMQVLRTPLPAAFRINSSSLFHADIRSQLENDFAPDLQSMVDEGDEEDAIKPLPWYPDNFAWHSNFSRMQLRKNQALKRFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSNHIVLDMCAAPGSKTFQLLEILHQSTKAGSLPDGMVIANDLDVQRCNLLIHQIKRMCTANLIVTNHEAQHFPRCHLKMDCDTVGPDHCASQLLFDRVLCDVPCSGDGTLRKAPDLWRRWNTGTGNGLHNLQIAVAMRGLSLLKVGGRMVYSTCSINPIENEAVVAEVLRRCEGAIELVDVSSELPQLIRRQGLKRWKVCDKGKSLVSCKEVPKVRRSVVLPSMFPNGGSYRDIDCNGNCDVNGHSKDGVQTVENPVMHEFAEEVSDFPLERCMRLLPHDQNSGAFFIAVLQKKSPLPAIVVKTRKEVNNQHIESVNQGNEDAQVLQVNPSESTHEEVCEQEFEDNKNEPNTAVFKFSPVIDEESDSKEAQEPHTVENIANVTPSKRKLQKQGKWKGVDPVVFFKEEAIIKSIKAFYGIDEQFPLDGHLVTRNSDTSNVKRIYYISKSVKNVLELNFSVGQQLKITCVGLKVFERQKSREGRSVECAFRITSEGLPLILPHITKQILSASPIDFKHLLQYKNIKFADFVDAKFGEKAANLMPGCCVVVLGEGNKTVAEALQVDESSIAIVCWKGGASLTVMVTSIECQELLERLLMRSDMVREKGSSMQEEERSNYAEDVEQESNCNSQGVDAA	807

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g03311	807	PRINTS	RNA (C5-cytosine) methyltransferase signature	449	466	IPR023267	GO:0001510
	Trre5g03311	807	PRINTS	RNA (C5-cytosine) methyltransferase signature	319	335	IPR023267	GO:0001510
	Trre5g03311	807	PRINTS	RNA (C5-cytosine) methyltransferase signature	269	281	IPR023267	GO:0001510
	Trre5g03311	807	PRINTS	RNA (C5-cytosine) methyltransferase signature	179	189	IPR023267	GO:0001510
	Trre5g03311	807	MobiDBLite	consensus disorder prediction	775	807	-	-
	Trre5g03311	807	Pfam	16S rRNA methyltransferase RsmB/F	169	353	IPR001678	GO:0008168
	Trre5g03311	807	MobiDBLite	consensus disorder prediction	793	807	-	-
	Trre5g03311	807	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	58	467	IPR029063	-
	Trre5g03311	807	MobiDBLite	consensus disorder prediction	1	34	-	-
	Trre5g03311	807	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	353	372	IPR023270	GO:0016428
	Trre5g03311	807	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	125	146	IPR023270	GO:0016428
	Trre5g03311	807	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	636	648	IPR023270	GO:0016428
	Trre5g03311	807	Gene3D	Vaccinia Virus protein VP39	41	466	IPR029063	-
	Trre5g03311	807	MobiDBLite	consensus disorder prediction	775	792	-	-
	Trre5g03311	807	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	11	782	IPR023267	GO:0001510
	Trre5g03311	807	MobiDBLite	consensus disorder prediction	20	34	-	-
	Trre5g03311	807	FunFam	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein	41	383	-	-
	Trre5g03311	807	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	64	467	IPR001678	GO:0008168
	Trre5g03311	807	ProSitePatterns	NOL1/NOP2/sun family signature.	268	279	IPR018314	GO:0003723\|GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g03311	Trre-Chr5	29693161	29700345	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g03311	K15334		-	gmx:100808598	1180.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g04973	7	56764173	56769704	Trre5g03311	5	29693161	29700345	PCT