Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04909 ATGTGTGTGATGTATGGTGGAACAGCCGTACCAGAAATTATGGAGTGTTCCACATTATGTTTAATCTCTTTGTTGCTTCTTTTTGGTTCCTGCTTTCAGAGTGTATCATCACAAAATTCATCTCGGAGTGACTTACAAGCTAACTTGCCACCAAGAGGTTGGAATTCCTATGATTCATTTTCATGGATAATTTCTGAACAAGAATTCTTACAGAATGCTGAACAAGTCGCTCAGCGTCTCCGTGTTTATGGATACGAGTATGTTGTGGTGGATTGGCTCTGGTATAGGAAGAAAGTCCCCGGCGCAAATAGTAATTCGCTTGGATTCGACTTGATTGATGAATGGGGAAGGATGGTCCCTGATCCAGCAAGATGGCCTTCTTCCAATGGTGGGAAGGGATTCAGTGAAGTTGCTAGGAAAGTACATAGTTTAGGTTTGAAGTTTGGGATTCATGTTATGAGAGGAATAAGCACACAAGCTGTGAATGCAAACACACCTATCTTAGATACAATAAAGGGTGGTGCTTATCAAGAAGCCGGTCGAGTGTGGCATGCAAAAGACATAGCAATCCCACAAAGGACCTGTGCATGGATGTCTAATGGTTTCATGAGTGTAAATACAACATTAGGAGCAGGAAGAGCTTTTCTAAGATCCCTTTATGAGCAGTATGCTACTTGGGGGATTGATCTTGTGAAACATGATTGTGTGTTTGGTGCTGACTTAGATTTAAACGAGATAACCTATGTATCTGAGGTTCTTAGCCAGGTTAATCGCCCCTTTGTGTATTCTATATCTCCCGGAACCAACGTAACATCAGCCTTGGCCAAGGAAGTGAGTCGACTAGTCAACATGTATCGCGTAACAGGTGATGATTGGGATTTATGGGGCGATGTCAAGCCTCACTTTAATATATCAAGGGATTTATCTGCAGCTAATATGATAGGAGCAAAAGGTTTAAAGGGAAAGTCATGGCCTGATTTGGACATGCTACCGTTCGGATGGCTAACTGATGCAGGTGTCAATGATGGTCCTCATAGGGACAGTAAACTGAATCTATTAGAGAAAAGGACACAGATGACTTTATGGGCTTTTGCAAAGTCACCCCTTATGTATGGAGGCGATGTGCGGAAGATTGATCCTGCTACCTACGACATTATCACGAATCCTACTTTGTTAGAGATTAATCATTTCAGCTCAAATAATATGGAGTTTCCTTATGGTCCGAGCTTGGAGAAGCGTCATAAAGGGATACCGAAAATATCTAAGAAAGGAAAGAAACTTATACATTCATTAGGCCTTACTAGCTGCACTGAATCAGAGGCAAGTGGTTGGAGTGTTGAAAATCTTAACCAAACTCTAGAAAGAATCTGTTGGAAAGGAAGTTTAGAAAACAATCCGAACCCTTTCTGCGTACACAAGAGAGAACTTCAGCAGCACACACTAGACGGACAGAGTAAGTATCAAGAGGAATATCGCGGGAAACATCAATTATTTGCAGCAAATCAAATGAGATTTTGCTTGGATGGTTCTTCAAAACAAAATGTTACCTCCAAAGAGTTTCAGAGAGGCTCATTTTCTCCTTGCAAAATGGATTCAAATCAGATTTGGGAGCTAACATCCAATGGGACCCTGGTAAATAGTTACTCGGGTCTTTGCACAACAGTAAATTATATAGAAGCAAATGTTGATGGGGTTCGCTCTTGGATTGCGACGGGAAGAAATGGAGAAGTGTATATGGCTTTCTTCAATCTAAGTGATCAACAGAATACAACAATATATGCAAAAACATCATTTGTGTCTAATGTTTTACTTGACAAAAGCATCAATTCATGTCAAGGTAAGGAAGTGTGGAGTGGAAAGGACGTTGTAACAACGCAAGGGACAATAACAATGGACGTGGAAGTTCATGGATGTGCACTTTTTGTTCTATATTGCAAATAA 1941 0.4075 MCVMYGGTAVPEIMECSTLCLISLLLLFGSCFQSVSSQNSSRSDLQANLPPRGWNSYDSFSWIISEQEFLQNAEQVAQRLRVYGYEYVVVDWLWYRKKVPGANSNSLGFDLIDEWGRMVPDPARWPSSNGGKGFSEVARKVHSLGLKFGIHVMRGISTQAVNANTPILDTIKGGAYQEAGRVWHAKDIAIPQRTCAWMSNGFMSVNTTLGAGRAFLRSLYEQYATWGIDLVKHDCVFGADLDLNEITYVSEVLSQVNRPFVYSISPGTNVTSALAKEVSRLVNMYRVTGDDWDLWGDVKPHFNISRDLSAANMIGAKGLKGKSWPDLDMLPFGWLTDAGVNDGPHRDSKLNLLEKRTQMTLWAFAKSPLMYGGDVRKIDPATYDIITNPTLLEINHFSSNNMEFPYGPSLEKRHKGIPKISKKGKKLIHSLGLTSCTESEASGWSVENLNQTLERICWKGSLENNPNPFCVHKRELQQHTLDGQSKYQEEYRGKHQLFAANQMRFCLDGSSKQNVTSKEFQRGSFSPCKMDSNQIWELTSNGTLVNSYSGLCTTVNYIEANVDGVRSWIATGRNGEVYMAFFNLSDQQNTTIYAKTSFVSNVLLDKSINSCQGKEVWSGKDVVTTQGTITMDVEVHGCALFVLYCK 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04909 646 Pfam Alpha galactosidase A 63 158 IPR002241 GO:0004553|GO:0005975
Trre7g04909 646 Pfam Alpha galactosidase A 221 395 IPR002241 GO:0004553|GO:0005975
Trre7g04909 646 SUPERFAMILY (Trans)glycosidases 42 396 IPR017853 -
Trre7g04909 646 CDD GH27 50 395 IPR002241 GO:0004553|GO:0005975
Trre7g04909 646 Pfam Alpha galactosidase C-terminal beta sandwich domain 563 643 IPR041233 -
Trre7g04909 646 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 20 645 IPR002241 GO:0004553|GO:0005975
Trre7g04909 646 SUPERFAMILY Ricin B-like lectins 494 572 IPR035992 -
Trre7g04909 646 PRINTS Glycosyl hydrolase family 27 signature 138 159 IPR002241 GO:0004553|GO:0005975
Trre7g04909 646 PRINTS Glycosyl hydrolase family 27 signature 353 374 IPR002241 GO:0004553|GO:0005975
Trre7g04909 646 PRINTS Glycosyl hydrolase family 27 signature 44 63 IPR002241 GO:0004553|GO:0005975
Trre7g04909 646 Gene3D Aldolase class I 41 398 IPR013785 -
Trre7g04909 646 SUPERFAMILY Glycosyl hydrolase domain 563 644 - -
Trre7g04909 646 Gene3D - 559 645 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04909 Trre-Chr7 56227061 56230552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04909 24 475 Glycoside Hydrolase AT3G26380 63.020 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04909 - - gmx:100802840 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04909 7 56227061 56230552 Trre7g04909 7 56227061 56230552 ECH
Trre7g04909 7 56227061 56230552 Trre5g03237 5 28495574 28500124 PCT