Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03237 ATGAAGTGTTTATCCATAATCTCTCTCTGCATTCTCCTCTGTCTCTTCTATTTTCAGGGTGTGTCATCTAAAAATGTATCTGAGAGTGTTCTACAGCTAGCTAGCATCCCACCAAGAGGTTGGAATTCCTATGATTCTTTTTGCTGGACAATTTCTGAACAAGAATTCTTACAAAGTGCTGAAATAGTTTCTCAGCGTCTCCATGATCATGGATACGAGTATGTTGTGGTGGATTATCTCTGGTATAGAAGGAAAGTTGAGGGAGCTTATCATGATTCTCTTGGATATGACGTGATTGATGAATGGGGGAGGATGATTCCTGACCCGGGAAGGTGGCCTTCTTCACAAGAGGGAAAAGGGTTCAAAGAAGTAGCTAATCGAGTGCATAGTTTGGGTTTAAAGTTCGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACGCCTATTCTAGATACAACAACGGGAGCTGCTTATCAAGAATCTGGTCGAGTGTGGCATGCAAAAGACATAGCAATACCCGAAAGGGTTTGTGGATGGATGCCGCATGGTTTCATGAGTGTAAATACAACTTTGGGTGCTGGCAAAGCTTTTTTGAGGTCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGTGAAACATGACTGTGTATTTGGCGATGACTTGGATTTAAATGAAATAAGCTATGTATCGGAGGTTCTCCGGGAGTTTGATCGCCCCATTGTCTATTCTTTGTCTCCTGGAACTAGTGTGACACCAGCCATGGCCAAGGATGTCAGCGGACTGGTCAATTTGTATCGTATAACAGCAGATGACTGGGATAACTGGATAGATGTCAAAAGACATTTTGATGTATCGAGGGATTTTGCAACTGCTAATATGATAGGAGCAAAAAGTTTAATGGGGAACTCATGGCCGGATTTGGACATGCTACCATTTGGATGGCTAACCGATCCTAATAAGTGTTATAGTACAAACTCAGGTCCATATAGGGATAGTAACCTCAACCTAGAAGAGAAGAGGACACAGATGACCCTGTGGGCAATGGCAAAGTCGCCCCTTATGTATGGTGGCGATGTACGGAAGATTGATCCCACAACATATGATGTTATCACAAATCCTACCCTTCTTGAGATTAATTCTTTTAGCACAAATAATATCGAGTTTCATTATATCACAAGCTTGAAGAATGAAGATCAGGATTCTGGAAAGCTAATGAGAAGAAGCTACAGAGAAACAAAAACATCATATACACATTCATTAGGCCTCACTAGCTGCACTGATTCAAAAGCAAGTGGTTGGACTAGTGAAAGTTTTGGCCTATATCCTGATAGAATCTGTTGGAAAAGGAACTTAGGAAACAAGCATCTTGACCCCTTATGCATGCACAAGAGAGAACTGAACTTTCCATCAGATGAAGAGAATATGTATCAAGATTATCATCATTTAGTTGCAGCTAACAGAATAAAATTTTGCTTGGATGTTTCTCCCAAACGAAGGCTTACTTCTAAAGAGTTCAAGAGAGGTACATTTTCGCCATGCAGGTGGGATTCAAATCAGTTGTGGCAGTTGAATCTTAATGGGACCATAGTAAATGGCTATTCTGGCTTATGTGCAACGGTAGAGCCTGTTAAAGCTACTGTTAATTCTGCCGGTTTTCGCTCTTGGGTTGCAACAGGAAGAGCAGGAGAAGTTTATGTTGCTTTCTTCAATCTAAGTGAACAAAAGGCGGTTATATCCGCGAAGACATCAGACCTAGCTAAGGTTTTGCTTGGGAGAGACTTAAGTTCTTGTAAAGGCAGTGAAGTGTGGAGTGGAAGTGACATTGTAATAACGCAGGGGACGTTATCAGCGGAAGTGGAAATGCATGGAACTGCACTATTTATTCTCAATTGCAACTAG 1920 0.4151 MKCLSIISLCILLCLFYFQGVSSKNVSESVLQLASIPPRGWNSYDSFCWTISEQEFLQSAEIVSQRLHDHGYEYVVVDYLWYRRKVEGAYHDSLGYDVIDEWGRMIPDPGRWPSSQEGKGFKEVANRVHSLGLKFGIHVMRGISTQAVNANTPILDTTTGAAYQESGRVWHAKDIAIPERVCGWMPHGFMSVNTTLGAGKAFLRSLYEQYAAWGVDFVKHDCVFGDDLDLNEISYVSEVLREFDRPIVYSLSPGTSVTPAMAKDVSGLVNLYRITADDWDNWIDVKRHFDVSRDFATANMIGAKSLMGNSWPDLDMLPFGWLTDPNKCYSTNSGPYRDSNLNLEEKRTQMTLWAMAKSPLMYGGDVRKIDPTTYDVITNPTLLEINSFSTNNIEFHYITSLKNEDQDSGKLMRRSYRETKTSYTHSLGLTSCTDSKASGWTSESFGLYPDRICWKRNLGNKHLDPLCMHKRELNFPSDEENMYQDYHHLVAANRIKFCLDVSPKRRLTSKEFKRGTFSPCRWDSNQLWQLNLNGTIVNGYSGLCATVEPVKATVNSAGFRSWVATGRAGEVYVAFFNLSEQKAVISAKTSDLAKVLLGRDLSSCKGSEVWSGSDIVITQGTLSAEVEMHGTALFILNCN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03237 639 Gene3D Aldolase class I 15 388 IPR013785 -
Trre5g03237 639 CDD GH27 37 386 IPR002241 GO:0004553|GO:0005975
Trre5g03237 639 PRINTS Glycosyl hydrolase family 27 signature 125 146 IPR002241 GO:0004553|GO:0005975
Trre5g03237 639 PRINTS Glycosyl hydrolase family 27 signature 344 365 IPR002241 GO:0004553|GO:0005975
Trre5g03237 639 PRINTS Glycosyl hydrolase family 27 signature 31 50 IPR002241 GO:0004553|GO:0005975
Trre5g03237 639 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 5 638 IPR002241 GO:0004553|GO:0005975
Trre5g03237 639 SUPERFAMILY Glycosyl hydrolase domain 556 637 - -
Trre5g03237 639 Gene3D - 551 638 IPR013780 -
Trre5g03237 639 Pfam Alpha galactosidase C-terminal beta sandwich domain 560 636 IPR041233 -
Trre5g03237 639 Pfam Alpha galactosidase A 50 145 IPR002241 GO:0004553|GO:0005975
Trre5g03237 639 Pfam Alpha galactosidase A 207 386 IPR002241 GO:0004553|GO:0005975
Trre5g03237 639 SUPERFAMILY (Trans)glycosidases 33 386 IPR017853 -
Trre5g03237 639 SUPERFAMILY Ricin B-like lectins 496 557 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03237 Trre-Chr5 28495574 28500124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03237 11 472 Glycoside Hydrolase AT3G26380 63.011 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03237 - - gmx:100777954 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04909 7 56227061 56230552 Trre5g03237 5 28495574 28500124 PCT