Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04898 ATGGGAAGTAAGAATTCAAAAGAGTCTCAAAGGAAACATGTAGTTTCACCATCATCAGCATCACCATCATCATCATCATCATCATCATATGGGTTTGTTGGTTCTTCATCTTCTTCATGGGAAAATAACTATGGATATCCACAATCAACATATCCATATCCACAACCACAACAAAATCCATATCAAAGACATAATAATCACCACCGCGCTACACAACACGATTATTCGAGGCCAAATAGGAAGTTAGATAGAAGATATTCAAGGATAGCTGATGATTATCATTCTCTTGATGAGGTTACTACTGCTCTTTCACATGCTGGCTTGGAATCTTCTAATCTCATTGTTGGGATTGATTTCACAAAGAGCAATGAATGGACAGGGAAGAGATCATTCAATCGAAAAAGTTTACATCACATCGGAAATGGTCAAAATCCTTACGAACAAGCAATCACAATTATTGGGAAAACATTAAGCACTTTTGATGAGGATAACATGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCCATTCAGATGAGAGGTGCTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAGATTGTTCCATGCCTCCGACTCACAGGACCCACCTCATTTGCCCCGATTATTGAGATGGCCATGACAATAGTCGAGAAAAGTGGTGGCCAATATCATGTCTTGCTTATAATTGCTGATGGACAGGTGACAAGAAGTGTTGACACACAGCATGGCAAGCTAAGTTCACAGGAAAAGAAGACAATAGATGCAATTGTAAAAGCTAGCGAGTATCCACTATCGATAGTTTTGGTTGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGACGATAACATTCCAGCTCGAGCCTTCGACAATTTTCAGTTTGTGAATTTTACAGAAATAATGTCAAAGAAAGTGGATTCAAACAGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCACAGCCTATTAGGGACACGGAGGGGATACTCACCAGATAGGGTTCCTTTACCTCCACCACAATATGAAAGGACTTCTTCCAGCAACGCCGCAACATCTTTTCGTTCAAACAGTTTTCAGCAAAGTACTCATACTTATGTGAGCAACGACAGTGAAATGAACTCAGAACCGAACTCAGAACCATCTTCAAGTGGTTTATATGACAATAAGATTTGCCCGATTTGTCTTACTAATGGGAAGGATATGGCCTTCGGTTGCGGGCATCAGACTTGTTGTGAATGTGGAGACAGCCTTGAATTCTGCCCTATTTGCCGGAGCACAATCGATACGAGAATAAAGCTTTATTAA 1380 0.3993 MGSKNSKESQRKHVVSPSSASPSSSSSSSYGFVGSSSSSWENNYGYPQSTYPYPQPQQNPYQRHNNHHRATQHDYSRPNRKLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGNGQNPYEQAITIIGKTLSTFDEDNMIPCFGFGDASTHDQDVFSFHSDERCCNGFEEVLSKYREIVPCLRLTGPTSFAPIIEMAMTIVEKSGGQYHVLLIIADGQVTRSVDTQHGKLSSQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKKVDSNRKETEFALAALMEIPSQYKATIDHSLLGTRRGYSPDRVPLPPPQYERTSSSNAATSFRSNSFQQSTHTYVSNDSEMNSEPNSEPSSSGLYDNKICPICLTNGKDMAFGCGHQTCCECGDSLEFCPICRSTIDTRIKLY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04898 459 SUPERFAMILY RING/U-box 406 455 - -
Trre7g04898 459 SUPERFAMILY vWA-like 111 294 IPR036465 -
Trre7g04898 459 ProSiteProfiles Zinc finger RING-type profile. 416 449 IPR001841 -
Trre7g04898 459 MobiDBLite consensus disorder prediction 1 83 - -
Trre7g04898 459 MobiDBLite consensus disorder prediction 352 383 - -
Trre7g04898 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 459 IPR013083 -
Trre7g04898 459 MobiDBLite consensus disorder prediction 67 83 - -
Trre7g04898 459 Pfam Copine 135 348 IPR010734 -
Trre7g04898 459 PANTHER COPINE FAMILY PROTEIN 1 1 436 - -
Trre7g04898 459 Pfam Zinc finger, C3HC4 type (RING finger) 413 454 - -
Trre7g04898 459 SMART VWA_4 110 313 IPR002035 -
Trre7g04898 459 MobiDBLite consensus disorder prediction 12 65 - -
Trre7g04898 459 MobiDBLite consensus disorder prediction 365 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04898 Trre-Chr7 56178987 56182043 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04898 K16280 - gmx:100800161 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04898 7 56178987 56182043 Trre7g04898 7 56178987 56182043 ECH
Trre7g04898 7 56178987 56182043 Trre5g03223 5 28037156 28040660 PCT