Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03223 ATGGGAGGAAGTAGTTCAAAAGGGTCTCATAGGAAGAAAAAACATGTTTCTTCATATGGGTCTTCAGGTTCTTCATCTTCATCATCATGGAATAATAATAATAATAACTATGATGGATATGAATATGGATATGCACCACAATCACCATATCCTCAGCAGAGTCCTTATCATCAGACGCCTCGTCGCCAATCTGCTTCAGCTCCATTTTATGAGAATTCACAGCCTAAAAAGAAGTTGGATAAGAGGTATTCAAGGATAGCTGATAATTATCATTCACTTGATGAGGTTACTGCTGCTCTTGCAAATGCTGGGCTGGAATCTTCCAATCTCATTGTTGGCATTGATTTCACAAAGAGCAACGAGTGGACAGGGAAGAGTTCATTCAACCGAAAAAGTTTACATCACATTGGAAGTGGTCAAAACCCTTATGAACAAGCAATCTCTATTATTGGGAAAACTCTATCTACTTTTGATGAAGATAACTTGATTCCATGTTTTGGATTTGGAGATGCATCTACACATGATCAAGATGTATTTAGCTTCTATTCAGAAGAGCAATTATGCAATGGTTTTGAGGAAGTTTTGGAACGATACCGAGAAATTGTTCCTCACCTTAAACTTGCAGGACCGACTTCGTTTGCCCCTATTATTGAGATGGCCATAACTATTGTTGAACAAAGTGCCGGCCAATATCATGTCCTGCTTATAATTGCAGATGGACAGGTGACCAGAAGCATTGATACAGAACATGGCCACTTAAGTCCGCAGGAACAGAAGACAATAAATGCGATCGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTAGGAGTTGGAGATGGACCATGGGAGATGATGAAGGAATTTGACGATAACATCCCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTAAGATAATGTCGAAGAATGTAAATCCAACCCGGAAAGAGACAGAGTTTGCTCTTGGAGCTTTGATGGAGATACCATCTCAATATAAGGCAACTATAGAGCTTGGCTTATTGGGTTCACGGAGAGGACATTCACCGGATAGGGTTCCTCTACCCACTCCTGTTTATAGTAGGATTTCTTCCAGCATCAATGGAAAATCTTTTCGGTCAAACAGTTTTCAGCAGAATGTGTCTAGAAGTACTGACTACGGATATGATAGCGGTGTTCACAATTGCGGATATGATAGCAGTGTTCACAATCGCACAGGACCATCTACAAGCTCTTTTCATGATAATAAGGTTTGCCCGATTTGTCTAACCGATCCAAAGGATATGGCTTTTGGTTGTGGGCATCAGACTTGTTGTGGATGTGGAGAAGACCTCGAATTCTGTCCCATTTGCCGGAGCACAATCAATACTAGGATAAAGCTTTACTAG 1398 0.4041 MGGSSSKGSHRKKKHVSSYGSSGSSSSSSWNNNNNNYDGYEYGYAPQSPYPQQSPYHQTPRRQSASAPFYENSQPKKKLDKRYSRIADNYHSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKSSFNRKSLHHIGSGQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQDVFSFYSEEQLCNGFEEVLERYREIVPHLKLAGPTSFAPIIEMAITIVEQSAGQYHVLLIIADGQVTRSIDTEHGHLSPQEQKTINAIVKASEYPLSIVLVGVGDGPWEMMKEFDDNIPSRAFDNFQFVNFTKIMSKNVNPTRKETEFALGALMEIPSQYKATIELGLLGSRRGHSPDRVPLPTPVYSRISSSINGKSFRSNSFQQNVSRSTDYGYDSGVHNCGYDSSVHNRTGPSTSSFHDNKVCPICLTDPKDMAFGCGHQTCCGCGEDLEFCPICRSTINTRIKLY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03223 465 Pfam Copine 132 345 IPR010734 -
Trre5g03223 465 Pfam Zinc finger, C3HC4 type (RING finger) 419 459 - -
Trre5g03223 465 ProSiteProfiles Zinc finger RING-type profile. 422 455 IPR001841 -
Trre5g03223 465 MobiDBLite consensus disorder prediction 1 80 - -
Trre5g03223 465 SUPERFAMILY vWA-like 108 291 IPR036465 -
Trre5g03223 465 SUPERFAMILY RING/U-box 413 460 - -
Trre5g03223 465 SMART VWA_4 107 307 IPR002035 -
Trre5g03223 465 PANTHER COPINE FAMILY PROTEIN 1 10 442 - -
Trre5g03223 465 MobiDBLite consensus disorder prediction 18 71 - -
Trre5g03223 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 465 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03223 Trre-Chr5 28037156 28040660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03223 K16280 - gmx:100798816 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04898 7 56178987 56182043 Trre5g03223 5 28037156 28040660 PCT