Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04887 ATGGCATCATCAACAGTAATTGCAATGACCATGATCAACACAAAGAAGTGCTTAAACAACACATCAAATTCACCAAAACTTTCCAACCCAACAAAACTCATTACAAAACCAACTTCACTCCTTTCCCTTAAAAACCTTTTTCCAAAGAAAATTCCCACCATAACAGAAAACACAAAACTATCAACTTCCATAGCAGGAACAGCACTAGCAGGAGCAATATTCTCAACACTTGGAACATGTAACCCTGCTTTTGCAGCACAGCAAATAGCTGATATAGCAGAAGCATCATCAACAGATAACCGCGGTTTAGCACTTTTGTTACCATTAATTCCAGCTATAGCTTGGGTTCTTTACAACATTCTTCAACCAGCACTTAACCAAATTAACCGAATGCGTAACGATAAAGGGGTTATCATTGGTTTGGGTCTTGGTGGATTAACAGCTTCTTCAGGGTTTTTGTCACCAGAAGATGCAATGGCTAGTGAAATTGCTGCAATTGCTGAAGCTGGTAGTAGTGATAATAGGGGTCAGCTTCTGTTGTTTGTGGTAGCACCAGCTATTCTTTGGGTTCTTTACAATATTTTGCAGCCTGCTCTTAATCAAATCAACAGAATGAGATCAGATTGA 627 0.3907 MASSTVIAMTMINTKKCLNNTSNSPKLSNPTKLITKPTSLLSLKNLFPKKIPTITENTKLSTSIAGTALAGAIFSTLGTCNPAFAAQQIADIAEASSTDNRGLALLLPLIPAIAWVLYNILQPALNQINRMRNDKGVIIGLGLGGLTASSGFLSPEDAMASEIAAIAEAGSSDNRGQLLLFVVAPAILWVLYNILQPALNQINRMRSD 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04887 208 Hamap Photosystem II protein Y [psbY]. 99 133 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Trre7g04887 208 Pfam Photosystem II protein Y (PsbY) 99 131 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Trre7g04887 208 Pfam Photosystem II protein Y (PsbY) 173 205 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Trre7g04887 208 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 207 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04887 Trre-Chr7 56134026 56134652 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04887 K02723 - vvi:100252545 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04887 7 56134026 56134652 Trre5g03188 5 27477470 27478057 PCT