Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03188 ATGGCAGCAACAATGGCAATGATGATCAACTCAAAGTGCCTAAACACAAGCCTACCCAAGTTACAAAATCCCACAACTAAGCTAACAACAACATGCAAAATCACCACCACTCAAAACCAACCAAAGGGTCTTATCTCAATTGAGAACACCAACTTTGTTTCACCTTCACTTGCAATTGCAGGAGCAATATTTTCATCTCTTGCAACTTCCGACGCGGCTTTTGCTGCTCAACAAATAGCAGAAATAGCTGAAGGTGATAACAGAGGAATAGCACTGTTGTTGCCATTGATTCCAGCTATAGCTTGGGTTTTGTTCAATATTTTGCAGCCAGCTTTGAACCAAATCAACCGTATGCGCAGCACGAGAGGAGTGATTGTTGGGCTTGGACTTGGGCTTGGTGGGCTTGCAGCTTCAGGTATGGTGCCAGAAGCATCTGCTAGTGAGATTGGTTTGATTGCTGATGCTGCTGCTGCAGGAAGTGACAACAGGGGTACACTTCTGTTGTTTGTGGTTGCACCAGCTATCCTTTGGGTGCTTTATAATATTTTGCAGCCTGCTCTCAACCAGATCAATAGGATGAGAAACTAG 588 0.4439 MAATMAMMINSKCLNTSLPKLQNPTTKLTTTCKITTTQNQPKGLISIENTNFVSPSLAIAGAIFSSLATSDAAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSTRGVIVGLGLGLGGLAASGMVPEASASEIGLIADAAAAGSDNRGTLLLFVVAPAILWVLYNILQPALNQINRMRN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03188 195 Hamap Photosystem II protein Y [psbY]. 86 120 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Trre5g03188 195 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 195 IPR038760 GO:0009523
Trre5g03188 195 Pfam Photosystem II protein Y (PsbY) 86 118 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Trre5g03188 195 Pfam Photosystem II protein Y (PsbY) 161 193 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03188 Trre-Chr5 27477470 27478057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03188 K02723 - zju:107428525 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03188 5 27477470 27478057 Trre5g03188 5 27477470 27478057 ECH
Trre7g04887 7 56134026 56134652 Trre5g03188 5 27477470 27478057 PCT