Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04884 ATGCATCAACTTGAACAACTACTCATCATTTTCCTCCCATTCCTCATCGGTTTAATCATAACATTCAACATCTTCATCTCACTAACCACATGGATCTTCAACACGTGTCTCCGATCTCAAAAACACTTCACCAAATCCTACGGTTCATGGGCGTTAATCACCGGAGCAACCGACGGCATCGGAAAAGCCTTATCCTATCAACTAGCAGAAAAAAATCTCAACCTAATTCTCGTAAGCAGAAACTCAAAAAAACTCGAAACAGTTAAAAACGAAATCAGAACCAAAAATCCTCACGTTCAAATCAAAACCGTTACGGTCGATTTTTCCGGCGAATTCACCACCGGTGTTCGAGAAATAGAAATTTTGGCGCGAGATTTAGATCTTGGAATTTTGATCAATAACGTTGGGATTACTTATCCTAAGGCTATGTATTTTCATGAGGTGAAAGAGGAATTATGGATGAAGATTGTTAGAGTGAATATTGAGAGTACAACGAGAATAACGAAAGCGGTTTTGGGTGGAATGATGGAAAGGAAGAAGGGTACAATCGTAAATATAGGGTCTGGTGCTGCTGTTGTTGTGCCTTCGCATCCTCTATTCACAATCTATGCTGCAACTAAAGCTTATGTAGATCAGTTTTCAAGATCTTTATATATGGAGTATAAACAATATGGAATCCACGTACAATGTCAGGTACCACTATATGTTGCGACAAATATGGTATCAAGGGTAGCATCTATTGGGAGAGATTCTTTATTCATACCAACACCTGAAGGTTATGCAAGAGCTGCTATTCGTAAAATTGGATATGAACCAAGATGCACACCTTATTGGGCTCACTCAATTCAGTGGACTTTTGCACGATTAATCCCTGACCCAATTCTTGATTATTGGCGCATGTCTATTGGTTTGCGACGGAGGAATCATGTGGATTGA 936 0.3953 MHQLEQLLIIFLPFLIGLIITFNIFISLTTWIFNTCLRSQKHFTKSYGSWALITGATDGIGKALSYQLAEKNLNLILVSRNSKKLETVKNEIRTKNPHVQIKTVTVDFSGEFTTGVREIEILARDLDLGILINNVGITYPKAMYFHEVKEELWMKIVRVNIESTTRITKAVLGGMMERKKGTIVNIGSGAAVVVPSHPLFTIYAATKAYVDQFSRSLYMEYKQYGIHVQCQVPLYVATNMVSRVASIGRDSLFIPTPEGYARAAIRKIGYEPRCTPYWAHSIQWTFARLIPDPILDYWRMSIGLRRRNHVD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04884 311 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 44 275 - -
Trre7g04884 311 CDD 17beta-HSD1_like_SDR_c 48 291 - -
Trre7g04884 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Trre7g04884 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Trre7g04884 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Trre7g04884 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 302 IPR036291 -
Trre7g04884 311 Gene3D - 42 277 - -
Trre7g04884 311 PRINTS Glucose/ribitol dehydrogenase family signature 224 241 IPR002347 -
Trre7g04884 311 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Trre7g04884 311 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Trre7g04884 311 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Trre7g04884 311 PRINTS Glucose/ribitol dehydrogenase family signature 50 67 IPR002347 -
Trre7g04884 311 PIRSF 11-beta-HSD1 2 310 - -
Trre7g04884 311 Pfam short chain dehydrogenase 50 244 IPR002347 -
Trre7g04884 311 PANTHER RH59310P 9 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04884 Trre-Chr7 56102935 56109660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04884 11 308 Lipid Metabolism Gene Families AT1G24470 56.376 1.51e-122 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04884 K10251 - jre:108985101 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04884 7 56102935 56109660 Trre7g04884 7 56102935 56109660 ECH
Trre7g04884 7 56102935 56109660 Trre5g03186 5 27465329 27467803 PCT