Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03186 ATGGATTGTTGTATAATGAGTAAGCTCAAAACTCAACCTTTCTGGTTCATTCTTCTCTTCTCCCTCGGTCTCTTCACCATTCTCAGATTCACTCTCATTCTTCTCAACTGGGTCTATGTCAATTTTCTCAGACAACCCAAAAATCTCAAAAAGTATGGATCTTGGGCACTCGTTACTGGACCCACTGACGGCATTGGAAAAAGCTTCGCTTTTGAACTTGCTCGCAAAGGTTTAAACCTAATCCTTGTTGGTCGAAACCCCGACAAACTCAAAGACGTTTCAGATTCTGTTAAATCCAAGTTCGGAAAAACCGAGGTTAAAACTGTTGTTGTTGATTTTTCCGGTGATCTTGATGAAGGTGTGAATAGAATTCGTGAAACGATTGAAGGGTTGGATATTGGGGTTTTGATTAATAACGTGGGAATTTCTTACCCTTATGCGAGGTTTTTTCATGAAGTTGATGAAGAGCTTTTGAAGAATTTGATTCATGTTAATGTTGTTGGAACTACTAAGGTTACACAAGCTGTTTTACCTGGGATGTTGAAGAGGAAAAAAGGAGCAATTGTTAATATTGGTTCTGGTGCTGCTATTGTTATTCCTTCTGATCCACTTTATGCTGTTTATGCTGCCACAAAAGCGTACATAGATCAATTTTCTAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGATGTGCAGTGTCAGGTTCCATTATATGTGGCAACAAAGATGGCATCGATAAAGAGATCTTCATTCTTTGTTCCATCAACAGATGGCTATGCTAAAGCAGGTGTGAAATGGATCGGATATGAACCACGTTGTACACCATACTGGCCGCATACCCTTCTTTGGGCCGTGGCTTGCTCGTTGCCTGAGTCTATAGTTGATGCTTGGCGCCTACGGTTTTGTATCGGTATTAGAAAGAGGGGTCAGCTCAAAGATTCAAGGAAGCAAGAATAA 963 0.4039 MDCCIMSKLKTQPFWFILLFSLGLFTILRFTLILLNWVYVNFLRQPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLILVGRNPDKLKDVSDSVKSKFGKTEVKTVVVDFSGDLDEGVNRIRETIEGLDIGVLINNVGISYPYARFFHEVDEELLKNLIHVNVVGTTKVTQAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFFVPSTDGYAKAGVKWIGYEPRCTPYWPHTLLWAVACSLPESIVDAWRLRFCIGIRKRGQLKDSRKQE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03186 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Trre5g03186 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Trre5g03186 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Trre5g03186 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Trre5g03186 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Trre5g03186 320 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 49 277 - -
Trre5g03186 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Trre5g03186 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 311 IPR036291 -
Trre5g03186 320 PIRSF 11-beta-HSD1 5 314 - -
Trre5g03186 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Trre5g03186 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Trre5g03186 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Trre5g03186 320 Gene3D - 49 267 - -
Trre5g03186 320 PANTHER RH59310P 14 318 - -
Trre5g03186 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03186 Trre-Chr5 27465329 27467803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03186 1 320 Lipid Metabolism Gene Families AT1G67730 65.000 1.79e-165 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03186 K10251 - gmx:100814139 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04884 7 56102935 56109660 Trre5g03186 5 27465329 27467803 PCT