Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04519 ATGCCTGGTTTTGTTGCTGGAAAGAAGATATTTTCGAAGAAAAATATGAGTTTTTCCAGTTTGACGGATCAAAATATGTCTGAGGCTCTAGATGATGTTGATGATGGCTCCATTCTTCCTGGGATCCATGATGATGTTTCAAAGTATTGCCTTGCACTTGTGCCTCGTTCTAACTTCCTAGCTATGGGCGGTGTGTGTAAGAGATGGAGGCGTTTTATTCAAAGCAAAGAATTCATAACCGTGAGAAAATTGGCTGGGCAGCTTGAGGAATGGCTCTATATCTTGACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGGATTCTTTTGGTCATAATCGCCGATCTCTTCCACCGATGCCTGGTCCATGTAAGGCTGAGTTTGGTGTTGTGGTTCTTAACGGAAAGCTTCTTCTTATGGCTGGCTATTCATCCATTGATGGAACTGTTTCTGTTTCAGCAGAGGTTTACCAATATAATTCTAACCTCGACAGCTGGATCAGATTGTCGAACATGAATGTGGCTCGGTACGACTTTGCTTGTGCAGAAGTCAATGGTTTGGTTTATGCTGTTGGAGGATATGGAGCAGAAGGTGATAGTCTCTCAAGCGCCGAGGTCTATGATCCCGATACTGACAAGTGGACAATGATTGAGAGCCTACGTCGTCCAAGATGGGGTTGCTTTGCCTGTGGATTTGAGGGGAAGCTCTATGTGATGGGTGGAAGGTCAAGCTTTACAATTGGAAATTCTAAGTTTGTTGATGTTTATGACCCCGAGAAGCATACGTGGCACGAGATGAAAAATGGGTGTGTCATGGTCACTGCTCACGCGGTACTAGAAAATAAGTTATTTTGTATGGAGTGGAAGAATCAACGGAAGTTATCGATATTTAATCCAGATGATAATTCATGGAAAATGGTACCGGTACCTCTGACGGGGAGTTCGAGTGTAGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCATTGAAGGAAGATCCTACATATAGGACTTTATTGTATGATCCAAATGCAGCGCCGGGGTGTGAGTGGGGGACTACTGATATAAAACCATCTGGTTTGTGCTTGTGCAGTGTTACTATCAAGGCCTGA 1128 0.4326 MPGFVAGKKIFSKKNMSFSSLTDQNMSEALDDVDDGSILPGIHDDVSKYCLALVPRSNFLAMGGVCKRWRRFIQSKEFITVRKLAGQLEEWLYILTADSEGKGSHWEVMDSFGHNRRSLPPMPGPCKAEFGVVVLNGKLLLMAGYSSIDGTVSVSAEVYQYNSNLDSWIRLSNMNVARYDFACAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTDKWTMIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYDPEKHTWHEMKNGCVMVTAHAVLENKLFCMEWKNQRKLSIFNPDDNSWKMVPVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNAAPGCEWGTTDIKPSGLCLCSVTIKA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04519 375 SMART kelc_smart 189 236 IPR006652 GO:0005515
Trre7g04519 375 SMART kelc_smart 138 188 IPR006652 GO:0005515
Trre7g04519 375 SMART kelc_smart 237 285 IPR006652 GO:0005515
Trre7g04519 375 Pfam Kelch motif 229 269 IPR006652 GO:0005515
Trre7g04519 375 Pfam Kelch motif 177 222 IPR006652 GO:0005515
Trre7g04519 375 Pfam Kelch motif 128 175 IPR006652 GO:0005515
Trre7g04519 375 Gene3D - 75 367 IPR015915 GO:0005515
Trre7g04519 375 SUPERFAMILY Kelch motif 89 335 IPR015915 GO:0005515
Trre7g04519 375 CDD F-box_AtAFR-like 38 82 - -
Trre7g04519 375 PANTHER OS02G0202900 PROTEIN 17 371 IPR045887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04519 Trre-Chr7 53181752 53182985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04519 44 220 Miscellaneous Gene Families AT4G33900 27.979 1.23e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04519 - - gmx:100815474 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04519 7 53181752 53182985 Trre7g04519 7 53181752 53182985 ECH
Trre5g03103 5 26256655 26258031 Trre7g04519 7 53181752 53182985 PCT