Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03103 ATGCCTGGTTTTGTTGTTGGAAAGAAGAGATTTATAAAGTCAAATATGTGTTTCGCCAATTCAGTCAATCAAGATAAATCAACTCGTACACGAAGCAATCATAGTTTAACTAGTGAGGATATGGATAAAGATGATAGCCCTATGGCTATTCTACCTGGGTTGCCCGATGATGTTGCAAAGTATTGCCTTGCACTTGTTCCTCCTTCTAACTTCCCAGCTATGGGTGGTGTCTGTAAGAAATGGAGGTTGTTTATTCAAAGTAAAGAATTTGTAATGGTACGAAAATTGGCAGGATTGCTTGAGGAATGGCTCTATTGCTTAACAATGGACAGTGAAGGGAGGGAAAGCTGTTGGGAGGTAATGGACTGTCTCGGTCGCAAATGTCTATCCCTTCCACCAATGCCTGGTCCATGTAAGGCTTCATTCGGGGTTGTGGTTCTTAATGGAAAGCTTGTTATCATAGCTGGTTATTCAGCTATTGAAGGAACCCTTGTTGCCTCCGCAGAGGTTTACCAATATGATTCTTACCTTAACAGTTGGAGCAGATTATCAAACATGAATGTGGCTCGTTATGACTTCGCTTGTGCCGAAGTGAACGGCCTGGTTTATATTGTTGGAGGTTATGGGGTGAGCGGCGACTGTCTCTCTAGTGTTGAGATGTATGATCCAGATACTGACAAGTGGACACTGATAGAAAGCCTCCGTCGTCCAAGATGGGGTTGCTTTGCTTGTGGATTTGAAGATAAACTCTATGTCATGGGTGGAAGGTCAAGCTTTACTATCGGAAACTCCAGGTTTGTCGATATATATAACCCCAAGAAGCACAGCTGGTGCGAGATTAAGAATGGCTGTGTTATGGTCACGGCTCATGCAGTATTGGAAAATAAATTGTTCTGTATTGAATGGAAAAACCAGCGGAAGCTGACAATATTCAGTCCAGAGAACAACTCATGGACAATGGTACCTGTCCCATTGACAGGGAGCTCGAGTGTTGGTTTTCGATTCGGGATACTGGATGGAAAGTTGTTGCTATTTCCCTTGGAGAAAGAACCTACTAATCAAACATTGTTATATGATCCAAATGCAGCTTCAGGGTCAGAGTGGAAAACTTCAGACATAAGGCCATCTGGTTTGTGCTTGTGCAGTGTGACAATCAAGGCATGA 1164 0.4296 MPGFVVGKKRFIKSNMCFANSVNQDKSTRTRSNHSLTSEDMDKDDSPMAILPGLPDDVAKYCLALVPPSNFPAMGGVCKKWRLFIQSKEFVMVRKLAGLLEEWLYCLTMDSEGRESCWEVMDCLGRKCLSLPPMPGPCKASFGVVVLNGKLVIIAGYSAIEGTLVASAEVYQYDSYLNSWSRLSNMNVARYDFACAEVNGLVYIVGGYGVSGDCLSSVEMYDPDTDKWTLIESLRRPRWGCFACGFEDKLYVMGGRSSFTIGNSRFVDIYNPKKHSWCEIKNGCVMVTAHAVLENKLFCIEWKNQRKLTIFSPENNSWTMVPVPLTGSSSVGFRFGILDGKLLLFPLEKEPTNQTLLYDPNAASGSEWKTSDIRPSGLCLCSVTIKA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03103 387 SUPERFAMILY F-box domain 47 121 IPR036047 GO:0005515
Trre5g03103 387 Pfam Kelch motif 241 281 IPR006652 GO:0005515
Trre5g03103 387 Pfam Kelch motif 189 234 IPR006652 GO:0005515
Trre5g03103 387 Pfam Kelch motif 140 187 IPR006652 GO:0005515
Trre5g03103 387 PANTHER OS02G0202900 PROTEIN 8 383 IPR045887 -
Trre5g03103 387 Pfam F-box domain 53 90 IPR001810 GO:0005515
Trre5g03103 387 SUPERFAMILY Kelch motif 101 362 IPR015915 GO:0005515
Trre5g03103 387 SMART kelc_smart 201 248 IPR006652 GO:0005515
Trre5g03103 387 SMART kelc_smart 249 297 IPR006652 GO:0005515
Trre5g03103 387 SMART kelc_smart 150 200 IPR006652 GO:0005515
Trre5g03103 387 CDD F-box_AtAFR-like 50 94 - -
Trre5g03103 387 Gene3D - 90 385 IPR015915 GO:0005515
Trre5g03103 387 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03103 Trre-Chr5 26256655 26258031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03103 54 232 Miscellaneous Gene Families AT4G33900 26.943 1.25e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03103 - - gmx:100802912 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03103 5 26256655 26258031 Trre7g04519 7 53181752 53182985 PCT