Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04478 ATGGAAATGATACTTTCTAGGTTACCTTACCATGATTCTCTCAAACTACTTGAGGCTGATATTCACCATGCCAATGCTTTGGCTGCTGCAATTCCAAGAGCAAAGGGTGGGAGTGTATTCCAAATGAAATTGGTTTATAGTCATTTGGCTCCTCTTTTTCTGTTGTTGCTACAATGGATGGATTGTTCTTGTTCATGCTTTCTACATAGGTATCTCAATCTCTTCCATATAATTATATACAAGGTACATAATGATGGTAGACCAAGTATAACTTCTCATGGAAGGAAAGCAACCATCCAGGACTTTTATGCTGTTATATTGCCGTCTCTTGAGCGGCTTCATGGTAGTTTAGAGAAGTTGGAGATTTGTATGAAAGGGCACTCTAGCTTAGAAGGTTCAAGTTACGGCAAGAAGATGATTGAAGCAAATGCAAAACTTACCAATGTTGATTTGGAAAGAGAAGATGAATGTGGGATTTGCTTAGAACCATGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCTATGTGTATCAAATGCTACCGCAAGTGGAACACAAAGTCGGAGTCTTGTCCATTTTGTCGTGGTAGCATAAGAAGAGTAAATTCCGAGGATTTATGGGTACTCACTTGTAACGAAGATGTAGTTGATGCTGAAACAGTTTCCAAAGAGGACTTGTTGCGATTCTACCTTTATATCAACAGCTTACCTAAAGATTACCCAGATGCACTTTTCTTAATGTATTATGAATACTTAATTTGA 762 0.3819 MEMILSRLPYHDSLKLLEADIHHANALAAAIPRAKGGSVFQMKLVYSHLAPLFLLLLQWMDCSCSCFLHRYLNLFHIIIYKVHNDGRPSITSHGRKATIQDFYAVILPSLERLHGSLEKLEICMKGHSSLEGSSYGKKMIEANAKLTNVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTKSESCPFCRGSIRRVNSEDLWVLTCNEDVVDAETVSKEDLLRFYLYINSLPKDYPDALFLMYYEYLI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04478 253 FunFam RING/U-box superfamily protein 138 204 - -
Trre7g04478 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 206 IPR013083 -
Trre7g04478 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Trre7g04478 253 Pfam Ring finger domain 155 195 IPR001841 -
Trre7g04478 253 SUPERFAMILY RING/U-box 147 200 - -
Trre7g04478 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Trre7g04478 253 SMART ring_2 157 194 IPR001841 -
Trre7g04478 253 PANTHER RING FINGER PROTEIN 41, 151 9 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04478 Trre-Chr7 52740608 52742589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04478 - - gmx:100790422 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03176 5 27355063 27356685 Trre7g04478 7 52740608 52742589 PCT