Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03176 ATGGCACTCATCCCATACTACCTTTCTCGGTTACCTTATCAGGATTTCCTCCAAATACTTGAGGCTGATATTCAACAAGCTAATGCTTTGGCTGCTGCAATTCCAAGAGCTAGAGGAGGGACTCTTATTAAAATGAAATTGGTTTGCAATCAATTGGCTCCTCTTGTTTTGTTGTTTTTGCAATGGATGGATTGTACTTGTGCTGGCTTTTTGCACAGTTATCTCAACCTTTATCACATACTTATATACAAAGAACCAAATGATGGTAGATCAATCATGTCTACTCGCGGAAGGAAAGCAACCATTAAGGACTTTTATGCCGTTATATTGCCATCTCTTCAGCGGCTTCACGGTAGCTTTGACGACAATTTGGAGACTTGTGAAGACGGTAACATGTGTTTAGAAGGTCCGAGTTGTGGTAATAAGGTAATTGAAGGAGATGGGAAACTAACCAATATTGATTTGCAACGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGTACCAAAATGGTTTTGCCTAATTGCTGTCACGCCATGTGCATCAAATGCTATCGCAAGTGGAACAGAAAGTCAGAGTCGTGTCCTTTTTGCCGCGGTAGCTTGAGGAGGGTTAATTCGGAGGATCTATGGGTATTAACTTGTGATGAAGATGTTGTCGATACTGAAACAGTTTCTAAAGAGGACTTGTTGCGTTTTTACCTCTATATCAACAAACTTCCCAAAGATAACCCAGATGCACTTTTCCTAATGTATTACGAATACCTTATTTGA 774 0.4018 MALIPYYLSRLPYQDFLQILEADIQQANALAAAIPRARGGTLIKMKLVCNQLAPLVLLFLQWMDCTCAGFLHSYLNLYHILIYKEPNDGRSIMSTRGRKATIKDFYAVILPSLQRLHGSFDDNLETCEDGNMCLEGPSCGNKVIEGDGKLTNIDLQREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDEDVVDTETVSKEDLLRFYLYINKLPKDNPDALFLMYYEYLI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03176 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Trre5g03176 257 FunFam RING/U-box superfamily protein 143 208 - -
Trre5g03176 257 PANTHER RING FINGER PROTEIN 41, 151 12 255 - -
Trre5g03176 257 SUPERFAMILY RING/U-box 158 206 - -
Trre5g03176 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Trre5g03176 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 210 IPR013083 -
Trre5g03176 257 SMART ring_2 161 198 IPR001841 -
Trre5g03176 257 Pfam Ring finger domain 159 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03176 Trre-Chr5 27355063 27356685 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03176 - - mtr:11441072 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03176 5 27355063 27356685 Trre5g03176 5 27355063 27356685 ECH
Trre5g03176 5 27355063 27356685 Trre7g04478 7 52740608 52742589 PCT