Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00232 ATGGCGGCTGCTTTCAATCTCTCCTCTTCTTCCTCACCTCCTCTCTCATGCCCTCGGGTATCCAATCACTTCAAATTGTTCAATGATTTGCCCCATGTCAGAGTCAATTATAAAATTCCCTCAACTCACAACAATGCTGCTTTTAGTGTTAAAGCTAAATTGGTAACTGGAGGGGGTGATTTGCTTTCTTATCCCAAAGATACCAATGATCTGGTTGTTGGTGCTCAAGTTGTTCAAATTAAGGAACAACTTAATGGAACATTCACATCAGACTCCGAGATAACCACCACTTCTTTCCCTGTTGACTACGATCAATTTGATTTGGAAAGCCCCGCCGAAGGTTTTGCTTCTATCCCTGAAGCCATCGAAGACATTCGCCGCGGAAAGATGGTAGTGGTTGTAGATGACGAAGATAGAGAAAATGAAGGAGATTTGATAATGGCTGCACAGTTGGCAACACCTGAAGCTATGGCTTTTATAGTAAAGCATGGAACTGGCATAGTTTGTGTAAGCATGAAAGAGGAAGATCTTGATCGATTGGAACTTCCTTTGATGGTGGACAGTAAGGCTAATGCTGAAAAACTTTGCACCGCGTTCACTGTGACAGTGGATGCTAAACATGGTACCAGCACAGGGGTGTCAGCTCATGATAGAGCAACTACAGTCTTGGCACTTGCATCTAGAGATTCAACTCCAGCTGATTTCAACCGACCAGGCCATATTTTCCCACTAAAATACAGGGATGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTACCGTACTTGCTGGTTTGGATCCGGTGTCAGTTCTGTGTGAGATTGTAGATGATGATGGTTCCATGGCTAGATTGCCTAAGCTTCGCCAGTTTGCCAAGCGTGAGAATTTGAAAATTGTATCTATCGCTGATTTGATAAGATATAGAAGAAAGAGAGATAAGTTAGTGGAACGTGCTTCAGCTGCAAGAATACCTACAATGTGGGGGCCATTCACATCATACTGTTATAGGTCTCTGTTAGACGGGATTGAGCATATTGCAATGGTTAAGGGTGACATTGGGGATGGAGAAGATGTTCTTGTGAGGGTACACTCAGAGTGTCTAACTGGAGACATATTTGGGTCTGCCAGATGTGACTGTGGAAATCAGCTTGCACTTGCAATGCAACAGATTGAGGCTGCCGGCAGGGGTGTACTTGTATATCTACGTGGACATGAAGGAAGGGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGATGGACGTGATACCGTAGAAGCCAATGAGGAGTTGGGATTGCCCGTTGACTCTAGGGAGTATGGCATCGGCGCACAGATATTGAAGGATCTAGGTGTTCAATCTATGAAGTTAATGACAAACAATCCATCAAAGTATGTTGGCCTCAAAGGTTATGGTTTGACTGTTTCTGGTAGGATACCATTGTTAACTCTTATCACTTCAGAGAACAAGAGATATTTGGAGACAAAACGCGTGAAAATGGGCCACGTCTATGGCAATGGTAAAAGTGTTGAAGATTCAAATGGTGTTACTGGTCTTTGA 1584 0.4369 MAAAFNLSSSSSPPLSCPRVSNHFKLFNDLPHVRVNYKIPSTHNNAAFSVKAKLVTGGGDLLSYPKDTNDLVVGAQVVQIKEQLNGTFTSDSEITTTSFPVDYDQFDLESPAEGFASIPEAIEDIRRGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLDRLELPLMVDSKANAEKLCTAFTVTVDAKHGTSTGVSAHDRATTVLALASRDSTPADFNRPGHIFPLKYRDGGVLKRAGHTEASVDLTVLAGLDPVSVLCEIVDDDGSMARLPKLRQFAKRENLKIVSIADLIRYRRKRDKLVERASAARIPTMWGPFTSYCYRSLLDGIEHIAMVKGDIGDGEDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILKDLGVQSMKLMTNNPSKYVGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHVYGNGKSVEDSNGVTGL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00232 527 Hamap GTP cyclohydrolase-2 [ribA]. 318 514 IPR000926 GO:0003935|GO:0009231
Trre3g00232 527 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 106 319 - -
Trre3g00232 527 NCBIfam GTP cyclohydrolase II 322 511 IPR000926 GO:0003935|GO:0009231
Trre3g00232 527 SUPERFAMILY RibA-like 318 489 IPR036144 -
Trre3g00232 527 CDD GTP_cyclohydro2 319 510 IPR000926 GO:0003935|GO:0009231
Trre3g00232 527 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 114 510 IPR016299 GO:0009231
Trre3g00232 527 PANTHER GTP CYCLOHYDROLASE II-RELATED 113 513 - -
Trre3g00232 527 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 113 317 IPR000422 GO:0008686|GO:0009231
Trre3g00232 527 SUPERFAMILY YrdC/RibB 115 316 IPR017945 -
Trre3g00232 527 Pfam GTP cyclohydrolase II 324 488 IPR032677 -
Trre3g00232 527 FunFam Riboflavin biosynthesis protein RibBA 320 491 - -
Trre3g00232 527 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 116 313 IPR000422 GO:0008686|GO:0009231
Trre3g00232 527 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 120 312 IPR000422 GO:0008686|GO:0009231
Trre3g00232 527 Gene3D DHBP synthase 104 319 - -
Trre3g00232 527 Gene3D GTP cyclohydrolase II 320 491 IPR036144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00232 Trre-Chr3 1536078 1540136 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00232 K14652 - gmx:100801046 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03987 7 48068623 48074190 Trre3g00232 3 1536078 1540136 PCT